Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTGCTCAACATCAACTGTTGAAAGAGGATCTGAAGAAGGTGGTCGTTAATGCAAGTGATATATCAGATTCATTTGATAGTTTTCCATATTATCTGAGgtatgcgctagctgcttaacctacaaagttgcagtaatttggtctgcaaatgaatgccaatttggaacttaatttagagaagctaatgtaagataaatga...

Basic information

species Oryza sativa
transcript LOC_Os07g47530.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 8
AGGTTGCTCAACATCAACTGTTGAAAGAGGATCTGAAGAAGGTGGTCGTTAATGCAAGTGATATATCAGATTCATTTGATAGTTTTCCATATTATCTGAGgtatgcgctagctgcttaacctacaaagttgcagtaatttggtctgcaaatgaatgccaatttggaacttaatttagagaagctaatgtaagataaatga----
   ||| || ||| ||||| ||||| || ||| ||||||| |  |   | | |||||||||||||||||| |||||||||| ||||||||||||||| |||||||  || | |  |  | || |     |    ||  |   |     | | | ||   ||   | | ||  ||  |  |  |||         || |      
CATTTGGTCGACACCAACTTTTGAAGGATGATTTGAAGAAAGCAGCTATAAGTGCAAGTGATATATCAGAATCATTTGATAATTTTCCATATTATCTTAGgtatgtactcg-tattccagctgct---ctttgttatatcaatacattattaattgtttatggtgcagtttgttatgtaacactataacgtttgaatttgcaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58692511|gb|CK081198.1|CK081198
EST:     AATGCAAGTGATATATCAGATTCATTTGATAGTTTTCCATATTATCTGAG                         TGAGAATACCAAAAATGCTCTCCTGTCTTCAGCGTATGTAAACTTATGTTG
genomic: AATGCAAGTGATATATCAGATTCATTTGATAGTTTTCCATATTATCTGAGgtatgcgcta ... ccttttgcagTGAGAATACCAAAAATGCTCTCCTGTCTTCAGCGTATGTAAACTTATGTTG
EST: gi|25797788|gb|CA753749.1|CA753749
EST:     AGTTTTCCATATTATCTGAG                         TGAGAATACCAAAAATGCTCTCCTGTCTTCAGCGTATGTAAACTTATGTTG
genomic: AGTTTTCCATATTATCTGAGgtatgcgcta ... ccttttgcagTGAGAATACCAAAAATGCTCTCCTGTCTTCAGCGTATGTAAACTTATGTTG
EST: gi|29629982|gb|CB634991.1|CB634991
EST:     AATGCAAGTGATATATCAGATTCATTTGATAGTTTTCCATATTATCTGAG                         TGAGAATACCAAAAATGCTCTCCTGTCTTCAGCGTATGTAAACTTATGTTG
genomic: AATGCAAGTGATATATCAGATTCATTTGATAGTTTTCCATATTATCTGAGgtatgcgcta ... ccttttgcagTGAGAATACCAAAAATGCTCTCCTGTCTTCAGCGTATGTAAACTTATGTTG