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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCATTGGTTGTTGGTAGGCCGATTCTTCTTGCACTGGAAGATATTGATGGCAGCCCTTCTTTCCTAGAAAAAGCTTTGCGTTTTCTTGAGAGACATGgtatggataatcattgttcgttatcagttatcaatgaagttcgaaaatgcctgaacccatccaaaaaattgtttggaaatgtgaatatttctttcag

Basic information

species Oryza sativa
transcript LOC_Os07g46450.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g46450.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G036872_T01 (Zea mays), 5'ss of exon 7
AAATCATTGGTTGTTGGTAGGCCGATTCTTCTTGCACTGGAAGATATTGATGGCAGCCCTTCTTTCCTAGAAAAAGCTTTGCGTTTTCTTGAGAGACATGgtatggataatcattgttcgttatcagttatcaatgaagttcgaaaatgcctgaac----ccatccaaaaaattgtttg-gaaatgtgaata-tttctttcag
|||||| | |||||||| ||||| || || ||||||||||||||||| |||||||| |||||||| || |||||||||||| |||| ||||||| |||||||| |   || || ||||| ||    ||  ||||   |||| | ||    ||| ||    |  |   ||| ||| | || ||||| |||||| |||||| |||
AAATCAATAGTTGTTGGCAGGCCAATACTGCTTGCACTGGAAGATATAGATGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaagcaatgttcatt----gtcgtcaa---agtttggaacctgctgcactttactgttgtaaacattttgtgtgaaatatgaataatttcttgcag

upper sequence: LOC_Os07g46450.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G340359_T01 (Zea mays), 5'ss of exon 7
AAATCATTGGTTGTTGGTAGGCCGATTCTTCTTGCACTGGAAGATATTGATGGCAGCCCTTCTTTCCTAGAAAAAGCTTTGCGTTTTCTTGAGAGACATGgtatggataatcattgttcgttatcagttatcaatgaagttcgaaaatgc-ctgaacccatccaaaaaattgtttggaaatgtgaatatttcttt-cag
|||||| | |||||||| ||||| || || ||||||||||||||||| |||||||| |||||||| || |||||||||||| |||| ||||||| |||||||| |   || || ||||| || |||   |    || |    |    ||| ||  ||   | |||| | ||  || ||| | |||||||||  || |||
AAATCACTAGTTGTTGGCAGGCCAATACTACTTGCACTGGAAGATATAGATGGCAGTCCTTCTTTTCTGGAAAAAGCTTTGTGTTTCCTTGAGAAACATGgtaggaccaaccaatgttcattgtcaccaaagtttggaacctgg---tgcactttactgttacaaatattttatttgaagtatgaatattttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58671855|gb|CK060541.1|CK060541
EST:     TGGCAGCCCTTCTTTCCTAGAAAAAGCTTTGCGTTTTCTTGAGAGACATG                         GAATAAAGGTGGAGGGAATTTTGCGCCAGGCTGCAGATGTGGAGGAGGTTG
genomic: TGGCAGCCCTTCTTTCCTAGAAAAAGCTTTGCGTTTTCTTGAGAGACATGgtatggataa ... tttctttcagGAATAAAGGTGGAGGGAATTTTGCGCCAGGCTGCAGATGTGGAGGAGGTTG