1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGATTGGAATTCTCTTGGATTTTGTCTGGTATGAACCATTCAGTGACAGCAATGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATGgtaaaaatctgaaaacaccatctggttcaggatcaaattatcgattatttactccagagttcagatgctcaggtctagtagcagtctagattttttgtgatagtgtagccacaaactgaaagtctgaaagtacccttttttttggatcagcaaactgacactatgatctccttaaag
species | Oryza sativa |
transcript | LOC_Os07g46280.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATG GTTCCTTGACCCCATTATCCATGGTCGGTACCCATACTCGATGCTCGAAATEST: gi|29642035|gb|CB647042.1|CB647042
genomic: AATGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATGgtaaaaatct ... ctccttaaagGTTCCTTGACCCCATTATCCATGGTCGGTACCCATACTCGATGCTCGAAAT
EST: AATGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATG GTTCCTTGACCCCATTATCCATGGTCGGTACCCATACTCGATGCTCGAAATEST: gi|163920879|gb|EG710090.1|EG710090
genomic: AATGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATGgtaaaaatct ... ctccttaaagGTTCCTTGACCCCATTATCCATGGTCGGTACCCATACTCGATGCTCGAAAT
EST: ATGGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATG GTTCCTTGACCCCATTATCCATGGTCGGTACCCATACTCGATGCTCGAAATEST: gi|29674577|gb|CB670852.1|CB670852
genomic: AT-GCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATGgtaaaaatct ... ctccttaaagGTTCCTTGACCCCATTATCCATGGTCGGTACCCATACTCGATGCTCGAAAT
EST: AATGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATG GTTCCTTGACCCCATTATCCATGGTCGGTACCCATACTCGATGCTCGAAAT
genomic: AATGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATGgtaaaaatct ... ctccttaaagGTTCCTTGACCCCATTATCCATGGTCGGTACCCATACTCGATGCTCGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTGGAATTCTCTTGGATTTTGTCTGGTATGAACCATTCAGTGACAGCAATGCTGATAGGGCTGCAGCACAGAGGGCAAGAGATTTTCACCTCGGATGgtaaaaatctgaaaacaccatctggttcaggatcaaattatcgattatttactccagagttcagatgctcaggtctagtagcagtctagattttttgtgatagtgtagccacaaactgaaagtctgaaagtacccttttttttggatcagcaaactgacactatgatctccttaaag
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA