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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGGAACTATTCGAATTCAGCGACCACACAAAGGACCATTTTATGTATCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaagatgcagtagaatattctctctctttttaggcttcttgaggctaatagtgtgttttactacaacag

Basic information

species Oryza sativa
transcript LOC_Os07g45350.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g45350.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G871572_T01 (Zea mays), 5'ss of exon 7
ATGTTGGAACTATTCGAATTCAGCGACCACACAAAGGACCATTTTATGTATCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaaga--tgcag-----tagaatattctctctcttt-----ttaggcttcttgaggctaatagtgtgttttactacaacag
|||||||||||||| ||||||||||||| || |||||||| || |||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| ||| |  ||        ||||| ||| ||| |  ||     ||||| |   | | |||| |||  |||||    |||    
ATGTTGGAACTATTAGAATTCAGCGACCGCATAAAGGACCCTTCTATGTATCACCAAAAAGCATCGATCAACTTATTATGAATCTTGGAAAATGGGCCAAgtaggaaaaattgttagaacttagaacattttcttttgttcttagttagggtatcttatgctagtagcatgttt-gtgacag---

upper sequence: LOC_Os07g45350.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G020574_T07 (Zea mays), 5'ss of exon 7
ATGTTGGAACTATTCGAATTCAGCGACCACACAAAGGACCATTTTATGTATCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaagatgcagtagaatattctctctctttttaggcttcttgaggctaatagtgtgttttactacaacag---------
                       ||||| ||||||||||| ||||||| |||  | || ||||| |||||||||||  ||||||||||||||||||||||||| ||| ||    ||||| ||  | |   || |||  ||||||         |   | |  || ||  |            
-----------------------CGACCGCACAAAGGACCCTTTTATGCATCATCAAAGAGCATTGATCAACTTATTGTGAATCTTGGGAAATGGGCCAAgtaggaaaatttgttagaacatatttttggttgtta--cttcttagttagggcatcttatgctagtatcatgtttgtggcag

upper sequence: LOC_Os07g45350.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G020574_T08 (Zea mays), 5'ss of exon 7
ATGTTGGAACTATTCGAATTCAGCGACCACACAAAGGACCATTTTATGTATCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaagatgcagtagaatattctctctctttttaggcttcttgaggctaatagtgtgttttactacaacag---------
|||||||||||||||||||||||||||| ||||||||||| ||||||| |||  | || ||||| |||||||||||  ||||||||||||||||||||||||| ||| ||    ||||| ||  | |   || |||  ||||||         |   | |  || ||  |            
ATGTTGGAACTATTCGAATTCAGCGACCGCACAAAGGACCCTTTTATGCATCATCAAAGAGCATTGATCAACTTATTGTGAATCTTGGGAAATGGGCCAAgtaggaaaatttgttagaacatatttttggttgtta--cttcttagttagggcatcttatgctagtatcatgtttgtggcag

upper sequence: LOC_Os07g45350.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA10G02920.1 (Glycine max), 5'ss of exon 7
ATGTTGGAACTATTCGAATTCAGCGACCACACAAAGGACCATTTTATGTATCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaagatgcagtagaatattctctctctttttag-gcttcttgaggctaatagtgtgttttactacaacag--------
|||||||  ||||||||||||||||||| |||||||| ||||||||||| || || ||||  || |||||||| ||    ||||| ||||||||||| | ||      |      | |   ||   |  || || || | ||  ||   | |||  | | |||||||| |            
ATGTTGGCGCTATTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGgt-----tacttttcaaatgtttggatgactattgagtgtttggtgtatccaatgtttttttttactaaattttcttattag

upper sequence: LOC_Os07g45350.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA02G16860.1 (Glycine max), 5'ss of exon 7
ATGTTGGAACTATTCGAATTCAGCGACCACACAAAGGACCATTTTATGTATCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaagatgcagtagaatattctctctctttttaggcttcttgaggctaatagtgtgttttactac-aacag---------------
|||||||  || |||||||||||||||| |||||||| ||||||||||| || || ||||  || |||||||| ||    ||||| ||||||||||| | ||   |   | ||    ||| |       | | ||| |  | |||  | ||  ||| | ||||  ||   ||                 
ATGTTGGGGCTTTTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGATCAACTAATTGCAAATCTGGGGAAATGGGCAAGgt--tactttaca----aatgtctggatgcctattaagtgttttggtg-taccagtttttttttttattgactaaattttcttatttag

upper sequence: LOC_Os07g45350.3 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv07s0104g00630.t01 (Vitis vinifera), 5'ss of exon 7
ATGTTGGAACTATTCGAATTCAGCGACCACACAAAGGACCATTTTATGTATCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaagatgcagtagaatattctct-------ctctttttaggcttcttgaggctaatagtgtgttttactacaacag-------------
|||||||||| ||||| |||||||| || || ||||||||||||||||| || || ||||| || ||||| ||| |    |||||||| |||||||| | || || | ||    ||   | || | |       | | | | |  ||| ||        |  | |  ||| |   |   |             
ATGTTGGAACAATTCGTATTCAGCGGCCCCATAAAGGACCATTTTATGTCTCTCCCAAAAGTATTGATCATCTTGTTGCAAATCTTGGCAAATGGGCAAGgt-tgtacataagataactttttttttgatagaccgcatatgatactttttcttttctttcttttccttttccttacatgcatttgtcctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33683627|gb|CF311866.1|CF311866
EST:     TCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAA                         GTTATACCAGCTTGCTTCCATGGGATTTGCAGCATTTGGTGTCTTTCTTCT
genomic: TCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaagat ... actacaacagGTTATACCAGCTTGCTTCCATGGGATTTGCAGCATTTGGTGTCTTTCTTCT
EST: gi|86905521|gb|CI285484.1|CI285484
EST:     TCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAA                         GTTATACCAGCTTGCTTCCATGGGATTTGCAGCATTTGGTGTCTTTCTTCT
genomic: TCCCCGAAAAGCATCGATCAACTTATCATGAATCTTGGGAAATGGGCCAAgtatgaagat ... actacaacagGTTATACCAGCTTGCTTCCATGGGATTTGCAGCATTTGGTGTCTTTCTTCT