1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTCTTTTCAGAATTCAACACTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctattctgttacatgtgggtttatctgtgatatgtctgcatgtacggatctgccttctcttggaacatgaaaagtgatttggatctgccttctc...
species | Oryza sativa |
transcript | LOC_Os07g39630.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|29675062|gb|CB671337.1|CB671337
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|218481593|gb|FG960934.1|FG960934
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: ATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|29673566|gb|CB669841.1|CB669841
genomic: ATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTCCAGTCATGATGCGTEST: gi|86500993|gb|CI143626.1|CI143626
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|38481075|gb|CF965164.1|CF965164
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTGTTGGGAGACATGCTGCTTGATAGATCCAACTCTGCAGTCATGATGCGTEST: gi|29673647|gb|CB669922.1|CB669922
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|29679531|gb|CB675806.1|CB675806
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|87008328|gb|CI301086.1|CI301086
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|29664684|gb|CB660959.1|CB660959
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|58663168|gb|CK051854.1|CK051854
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|25799534|gb|CA755495.1|CA755495
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|29656023|gb|CB652298.1|CB652298
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|66915714|gb|CX102562.1|CX102562
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTGTTGGGAGACATGCTGCTTGATAGATCCAACTCTGCAGTCATGATGCGTEST: gi|58688748|gb|CK077435.1|CK077435
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|29660229|gb|CB656504.1|CB656504
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTEST: gi|58674983|gb|CK063670.1|CK063670
genomic: CTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
EST: TAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCCAGGCTATCAAG TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
genomic: TAGGTTGCTATCATCAACCAACTACATAACAAAAAGGC-AGGCTATCAAGgtattgctat ... cccccttcagTTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTTTCAGAATTCAACACTAGGTTGCTATCATCAACCAACTACATAACAAAAAGGCAGGCTATCAAGgtattgctattctgttacatgtgggtttatctgtgatatgtctgcatgtacggatctgccttctcttggaacatgaaaagtgatttggatctgccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctct