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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTATGGCTTTTGCACGTGCTGTGGCAGCTGGGTTTGACATCGACAATCTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGATgtaagtagtcttcgtcattagttgttttttttataagctggatatcttaatgccttggcccttttgtgctttaaacatatccttattgatgctattttat...

Basic information

species Oryza sativa
transcript LOC_Os07g26440.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g26440.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G063806_T01 (Zea mays), 5'ss of exon 7
AGGCTATGGCTTTTGCACGTGCTGTGGCAGCTGGGTTTGACATCGACAATCTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGATgtaagta-gtcttcgtcattagttgttttttttataagctggat--atcttaatgccttggc-ccttttgtgctttaaacatatcctta--ttgatgctattttat
||||||||||||| || |||||||| || |||||||||||||| |||||  ||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||   | |   ||||| ||| |  ||||||| |||||||  | ||   || ||||    ||| |||| || |    || | | |  ||   |||       
AGGCTATGGCTTTCGCTCGTGCTGTAGCTGCTGGGTTTGACATTGACAACTTGGGTTACTTGATCGCATTTGCAGAGCGCTTTGGTGCTGCACGTCTGATgtaagtatagccttaccattacttgctggttttatatgctggattaaactagttgtcttgatatcttctgtgtttaagttgtaacttgaccttagagctg------

upper sequence: LOC_Os07g26440.2 (Oryza sativa), 5'ss of exon 7
lower sequence: AT5G43310.4 (Arabidopsis thaliana), 5'ss of exon 7
AGGCTATGGCTTTTGCACGTGCTGTGGCAGCTGGGTTTGACATCGACAATCTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGATgtaag-------tagtcttcgtcattagttgttttttttataagctggatatctta-atgccttggcccttttgtgctttaaacatatccttattgatgctattttat-------------------------
| |  ||||| ||||||||||||||||||||||| |||||    ||  || ||  |    | ||  | || ||  |    ||||| || ||||||||||||| ||       |||| | |  || |   |  ||| |||   | |     |||| | || | ||      |||  | || ||| | |   ||  |     || ||                            
AAGGAATGGCCTTTGCACGTGCTGTGGCAGCTGGTTTTGAGGCTGATGATATGATTCCTCTTATATCTTTCGCCAAAACTTTTGGAGCCTCACGTTTGATgtgagaagattgtagtttacaccaatttcttctttgttttgcaaccaataatctcatatccattaaagtctttaagtttgaaagaaacttttcatagacttacttctcatgtttggtttcaacaatgttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58671796|gb|CK060482.1|CK060482
EST:     CTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGAT                         GAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGG
genomic: CTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGATgtaagtagtc ... aattgaatagGAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGG
EST: gi|29676452|gb|CB672727.1|CB672727
EST:     CTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGAT                         GAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGG
genomic: CTGGGTTACTTGATTGCGTTTGCAGAGCGCTTTGGTGCTTCACGTTTGATgtaagtagtc ... aattgaatagGAGGGCATGTTCGCAGTTCATCGAACTGTGGAAGCGAAAGCATGAAACTGG