1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGCAAGCCCTGGCCAAATATCACTCCTTGTGCTAAAGACTTTGTACAAAAGTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaactttatatcatttttggatgtcttaaatttaagtatgataatctgattagggaaactctatatcattttgggacatcttgaatgcaagtttg...
species | Oryza sativa |
transcript | LOC_Os07g22710.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTAT CACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATAEST: gi|29628582|gb|CB633593.1|CB633593
genomic: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaact ... ttttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
EST: GTTGC-TGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTAT CACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATAEST: gi|33798127|gb|CF324924.1|CF324924
genomic: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaact ... ttttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
EST: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTAT CACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATAEST: gi|58602510|gb|CK013038.1|CK013038
genomic: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaact ... ttttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
EST: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTAT CACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
genomic: GTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaact ... ttttcttcagCACATGAATGGGTGAGAGAAGGAGGACAGGCATCTGATATACCTCTAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAAGCCCTGGCCAAATATCACTCCTTGTGCTAAAGACTTTGTACAAAAGTTGCTTGTTAAGGATCCCCGTGCAAGATTAACTGCTGCTCAGGCATTATgtatgtaactttatatcatttttggatgtcttaaatttaagtatgataatctgattagggaaactctatatcattttgggacatcttgaatgcaagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT