1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGgtattatcacatgcccattttagtttttttttgttaattgattatgtttggagggtatggtcctatgatcctatctcatgttctttgtaaactattgtgg...
species | Oryza sativa |
transcript | LOC_Os07g19560.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGGATGGGAGGTCGAGCAACGTG GCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCEST: gi|86427443|gb|CI072540.1|CI072540
genomic: CTGGATGGGAGGTCGAGCAACGTGgtattatcac ... atcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
EST: ACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTG GCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCEST: gi|29637898|gb|CB642907.1|CB642907
genomic: ACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGgtattatcac ... atcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
EST: CCCAACTCTTCCTGGGTTTGGACGTGCTGGATGGGAGGTCGAGCAACGTG GCTCCCCTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACCEST: gi|88845545|gb|CI084470.1|CI084470
genomic: ACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGgtattatcac ... atcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
EST: CCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTG GCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
genomic: CCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGgtattatcac ... atcattgtagGCTCCACTGGAAGAGAAGGCAAGGAAAGGAGCAGAGATCAGGGCAGAGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAACCTCAAAAAGAAATTTCGTGCTAAAACACAACAAACTGAAAATGCACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAGGTCGAGCAACGTGgtattatcacatgcccattttagtttttttttgttaattgattatgtttggagggtatggtcctatgatcctatctcatgttctttgtaaactattgtgg
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