1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACTACAGCCTAATATACAGGACTCCTGAGTTGAATGGTGTGAAGGCAGCTTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaaccatttctccttattttctgtcctaattgcttcatcgtatttagtgctatttacaatacaatcgcactcgttcttgtacatttttttagccgg...
species | Oryza sativa |
transcript | LOC_Os07g04990.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGEST: gi|313083769|gb|HO213899.1|HO213899
genomic: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
EST: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCEST: gi|95101321|gb|CI693066.1|CI693066
genomic: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTC
EST: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGEST: gi|29686327|gb|CB682602.1|CB682602
genomic: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
EST: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGEST: gi|86892489|gb|CI311960.1|CI311960
genomic: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
EST: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGEST: gi|29686352|gb|CB682627.1|CB682627
genomic: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
EST: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGEST: gi|29684749|gb|CB681024.1|CB681024
genomic: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
EST: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGEST: gi|29685611|gb|CB681886.1|CB681886
genomic: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
EST: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGEST: gi|29685612|gb|CB681887.1|CB681887
genomic: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
EST: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAGEST: gi|86838940|gb|CI330354.1|CI330354
genomic: TTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
EST: TGATGAGGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAG GTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
genomic: TGATGA-GCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaacca ... cgttgttcagGTGTTCTGTCAGGAAAATACACTCCAGAAAAACCTCCTACCGGTCCTCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTACAGCCTAATATACAGGACTCCTGAGTTGAATGGTGTGAAGGCAGCTTGTGATGAGCTTGGCATCACCCTGATTGCTTATTCCCCAATAGCCCAAGgtgagaaccatttctccttattttctgtcctaattgcttcatcgtatttagtgctatttacaatacaatcgcactcgttcttgtacatttttttagccgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT