1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTAACTGCTCTTGTTGATTCTCAGAATAAGAAAACTGTTAAGATGCAAAAATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGGgtaaccaaaaactccatttcttaattcattggatgtatatgcaacactgaatgacatgtgtatgacttacttttgtcccaatgctgcttctgatatggtt...
species | Oryza sativa |
transcript | LOC_Os07g01880.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGG GCCTTGGGCCAAAATATTCGAGCCCATTCAATTCTTCAACGCAAAAAAGAAEST: gi|29639167|gb|CB644176.1|CB644176
genomic: AATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGGgtaaccaaaa ... caatatgcagGCCTTGGGCCAAAATATTCGAGCCCATTCAATTCTTCAACGCAAAAAAGAA
EST: AATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGG GCCTTGGGCCAAAATATTCGAGCCCATTCAATTCTTCAACGCAAAAAAGAAEST: gi|58674618|gb|CK063305.1|CK063305
genomic: AATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGGgtaaccaaaa ... caatatgcagGCCTTGGGCCAAAATATTCGAGCCCATTCAATTCTTCAACGCAAAAAAGAA
EST: AATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGG GCCTTGGGCCAAAATATTCGAGCCCATTCAATTCTTCAACGCAAAAAAGAAEST: gi|89178944|gb|CI043449.1|CI043449
genomic: AATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGGgtaaccaaaa ... caatatgcagGCCTTGGGCCAAAATATTCGAGCCCATTCAATTCTTCAACGCAAAAAAGAA
EST: AATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGG GCCTTGGGCCAAA-TATTCGAGCCCAT-CA-TTCTTCAA
genomic: AATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGGgtaaccaaaa ... caatatgcagGCCTTGGGCCAAAATATTCGAGCCCATTCAATTCTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAACTGCTCTTGTTGATTCTCAGAATAAGAAAACTGTTAAGATGCAAAAATGGATCGAATCTAAGGATCCTGAGAAAGTGAAGCAGGAAAAAGAAAGGgtaaccaaaaactccatttcttaattcattggatgtatatgcaacactgaatgacatgtgtatgacttacttttgtcccaatgctgcttctgatatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA