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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATCAGCTGATTTATTCAAGACTGCATTTGATCTTATGGTCTCTGTAACTCTTTTTGTTGGGCGATTTGATATGCGCATGATGCAAgtaagagtgtttcctctggaacttttactcaatatgatatgcccaacatgaatataagctctaaggttctccaagtcagaattgtgattcatttccttgg...

Basic information

species Oryza sativa
transcript LOC_Os07g01540.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g01540.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G135839_T01 (Zea mays), 5'ss of exon 7
GACATCAGCTGATTTATTCAAGACTGCATTTGATCTTATGGTCTCTGTAACTCTTTTTGTTGGGCGATTTGATATGCGCATGATGCAAgtaagagtgtttcctctggaacttttactcaatatgatatgcccaacat-gaatataagctctaaggttctccaagtcagaattgtgattcatttccttgg
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |   |  |  |||  |   | ||| ||   || || ||| ||   | |  |  |||   |    ||||| ||||   | ||   |     |||  | |
GACATCAGCTGATTTATTCAAGACAGCATTTGATCTTATGGTCTCTGTGACTCTTTTTGTTGGGCGATTTGACATGCGCATGATGCAGgtcaatttcctatctccagctttatta-tctgcat-atttgcacatttttgtgtcaaagtattctttttctcaaagt---actttctacatccttctgtag

upper sequence: LOC_Os07g01540.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 7
GACATCAGCTGATTTATTCAAGACTGCATTTGATCTTATGGTCTCTGTAACTCTTTTTGTTGGGCGATTTGATATGCGCATGATGCAAgtaagagtgtttcctctggaacttttactcaatatgatatgcccaacatgaatataagctctaaggttctcca-agtcagaattgtgattcatttccttgg---------
 |||||||||||| | || ||||| || ||||| ||  |||| || |||||| | |||||||| || ||||| |||||||||||||| |||  |    |||| |    | | ||   ||  ||| | ||   ||||| |   |   || |    || |  | ||  |||||     |   | ||| |           
AACATCAGCTGATCTTTTTAAGACAGCTTTTGACCTCCTGGTATCAGTAACTGTGTTTGTTGGTCGCTTTGACATGCGCATGATGCAGgtacaa----ttccac----attcttttgcatcatggt-tgtt-aacattatggtgtccttttttcttttaaatagcaagaatcactctctttctccctctctctgcctc