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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTTGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTGTTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGgtaagaacatgtcctgattttatttcacagtatttgggaccagttaatattttcccttaaatttcaatgccaaagaaaaatttagcctttccttttactt...

Basic information

species Oryza sativa
transcript LOC_Os06g46310.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g46310.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 7
TGCTTTTGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTGTTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGgtaagaacatgtcctgattttatttcacagtatttgggacc---agttaatattttcccttaaatttcaatgccaaagaaaaatttagcctttccttttactt---------------------------------------------------------------------------------
                           |||||| || |||||||||||||| |||||||||||||||||||| |||||  | || || || ||||||||||||||| ||| || | |||  || ||  ||||||    |     |    | ||| |     ||    |  |   ||   | | | ||| |       | | |                                                                                  
---------------------------AATCCCAGTATGGTGTGGTGTTCTAATAACTGGACTCAGCACTCTAATGCTCTTATTGCTGCAGCAATATGGGgtaagaccatttcat-attacatgtccaagtattcctcattgaaaacctaaattctattcaaagcagctttattaacagatagtatagacaagatcatcaatatgatgacatagttaatagacatcactcatatcggtcttgtttgagtggctcatattgtgtactgtaattttcttggtgcag

upper sequence: LOC_Os06g46310.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G069198_T05 (Zea mays), 5'ss of exon 7
TGCTTTTGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTGTTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGgtaagaacatgtcctgattttatttcacagtatttgggacc---agttaatattttcccttaaatttcaatgccaaagaaaaatttagcctttccttttactt---------------------------------------------------------------------------------
|||||||||| | |||||||| || | |||||| || |||||||||||||| |||||||||||||||||||| |||||  | || || || ||||||||||||||| ||| || | |||  || ||  ||||||    |     |    | ||| |     ||    |  |   ||   | | | ||| |       | | |                                                                                  
TGCTTTTGCTCTAAACATGCTGTTCAGAATCCCAGTATGGTGTGGTGTTCTAATAACTGGACTCAGCACTCTAATGCTCTTATTGCTGCAGCAATATGGGgtaagaccatttcat-attacatgtccaagtattcctcattgaaaacctaaattctattcaaagcagctttattaacagatagtatagacaagatcatcaatatgatgacatagttaatagacatcactcatatcggtcttgtttgagtggctcatattgtgtactgtaattttcttggtgcag

upper sequence: LOC_Os06g46310.3 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 7
TGCTTTTGCTTTGAACATGCTCTTTAAAATCCCTGTGTGGTGTGGTGTTCTGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGgtaagaacatgtcctgattttatttcacagtatttgggaccagttaatatt------ttcccttaaat---ttcaatgccaaagaaaaatttagcctttccttttactt
 || ||||| |||||||||||||| || || ||||||||||||||||||||  | || || || || ||  || | || ||     |||| |||||||||||| |   || |        |||| ||  | || |||   ||  || ||||      ||   ||| ||   ||  ||||   | ||| |   ||   |           
AGCCTTTGCATTGAACATGCTCTTCAATATTCCTGTGTGGTGTGGTGTTCTTCTTACAGGGCTTAGTACATTGGTTCTTCTAGCTTTACAGCAATATGGGgtatgtggatatatcttccatattccat-gcatctggatgcaactattattgaatggtttatttacatcgttttcatgcagtaaaaacagaaagtactgta--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29664628|gb|CB660903.1|CB660903
EST:     TGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGG                         GTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAACAACT
genomic: TGATAACTGGACTCAGCACTCTGATGCTACTGTTACTACAACAATATGGGgtaagaacat ... ttttgtgcagGTCCGTAAACTGGAATTTCTGATAGCTATTCTGGTGTCATTAATAGCAACT