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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTACTGCTGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgttctgtttttgtatttgttctccactgatattatgcatcttgtagctatctaaacatgttatgagtaatttagagtttgaactgtactagcg...

Basic information

species Oryza sativa
transcript LOC_Os06g45840.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218486576|gb|FG956240.1|FG956240
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|218500576|gb|FG960552.1|FG960552
EST:     TGATGAGATATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|218481447|gb|FG951027.1|FG951027
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACC-AATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|38474825|gb|CF958958.1|CF958958
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|88688887|gb|CI732463.1|CI732463
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|27545921|gb|CA764047.2|CA764047
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|218489538|gb|FG952484.1|FG952484
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|29637643|gb|CB642652.1|CB642652
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|218494859|gb|FG953214.1|FG953214
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|89177323|gb|CI250772.1|CI250772
EST:     GATGAGAAATCTGTCCATGAACTGT-ACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: GATGAGAAATCTGTCCATGAACT-TAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|88689244|gb|CI732820.1|CI732820
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|88689640|gb|CI733216.1|CI733216
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|88691348|gb|CI733931.1|CI733931
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACAT                         CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
EST: gi|27334389|gb|CA882840.1|CA882840
EST:     TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAGCTTTGCGGCACAT                         CTGAGCTTGCTGTCAGCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA
genomic: TGATGAGAAATCTGTCCATGAACTTAACTAGCCCCAACTTTGCGGCACATgtaagttgtt ... ctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAA