1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATGGTAATAGGGTCGCTGCAGAGAACACCAAGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctcttttatttgtgcaaacttgtaatcttgcaaaaggtagacttgcacgtaagtgaactgtcatggatctctgtggtaacaacggctgccttttcatgttttgctctttgacaactgcag
species | Oryza sativa |
transcript | LOC_Os06g38470.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|88255777|gb|CI353648.1|CI353648
genomic: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|86911312|gb|CI317632.1|CI317632
genomic: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: GGGCACAGAACCTGCGGCTGATGGACGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGGCCATAGACGAACCAGGCTCCCTGAAAGTEST: gi|88481000|gb|CI418271.1|CI418271
genomic: GGGCACAGAACCTGCGGCTGATGGA-GTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGAT-GGCCATAGACGAACCAGGCTCCCTGAAAGT
EST: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|88843364|gb|CI372264.1|CI372264
genomic: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: TCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|88459569|gb|CI519630.1|CI519630
genomic: TCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|29674988|gb|CB671263.1|CB671263
genomic: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|89181796|gb|CI113302.1|CI113302
genomic: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|88506074|gb|CI433580.1|CI433580
genomic: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|86834547|gb|CI344478.1|CI344478
genomic: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: CTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|88457166|gb|CI531765.1|CI531765
genomic: CTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: CTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|88258870|gb|CI359260.1|CI359260
genomic: CTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: AGGGCACAGAACCTTCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTCEST: gi|88256779|gb|CI359167.1|CI359167
genomic: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
EST: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTT CCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
genomic: AGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctc ... acaactgcagCCTACCGATGCAAGTGCGATGGCCATAGACGAACCAGGCTCCCTGAAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGTAATAGGGTCGCTGCAGAGAACACCAAGGGCACAGAACCTGCGGCTGATGGAGTTGGTTCCTCGAAACAAACTGTTgtaagtgctcttttatttgtgcaaacttgtaatcttgcaaaaggtagacttgcacgtaagtgaactgtcatggatctctgtggtaacaacggctgccttttcatgttttgctctttgacaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA