1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAGACCTTTGTACAGCAACCCACCCGTTCATGGTGCATTAATTGTTTCAACTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatagttcatccttccaaacccttttaaagtaaagaaaatttatgaaaactgtcataattataagaattggtgtgtttggagttgagcatttccccccctgccatttgtctcag
species | Oryza sativa |
transcript | LOC_Os06g35540.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|86415209|gb|CI069612.1|CI069612
genomic: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|86521313|gb|CI161519.1|CI161519
genomic: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCGTTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|88958600|gb|CI096116.1|CI096116
genomic: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: AGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|157650051|gb|EX449685.1|EX449685
genomic: AGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|89182827|gb|CI045585.1|CI045585
genomic: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: AGTTTATGGCTGAAAGAGGTCAAG GGTATGTCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|88849517|gb|CI089425.1|CI089425
genomic: AGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|86428294|gb|CI074975.1|CI074975
genomic: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|86855856|gb|CI271075.1|CI271075
genomic: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|88245868|gb|CI245717.1|CI245717
genomic: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: ATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|88507917|gb|CI435423.1|CI435423
genomic: ATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: GTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|86601803|gb|CI258479.1|CI258479
genomic: GTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|3760200|gb|C97458.1|C97458
genomic: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTTEST: gi|89188646|gb|CI115895.1|CI115895
genomic: CTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
EST: TATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAG GGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCGAAGAGAACCTT
genomic: TATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatag ... tttgtctcagGGTATGGCTGATCGTATCATTGGAATGCGAACAGCACTCAAAGAGAACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGACCTTTGTACAGCAACCCACCCGTTCATGGTGCATTAATTGTTTCAACTATTCTTGGTGATCCGGAGTTGAAAAGTTTATGGCTGAAAGAGGTCAAGgtagttatagttcatccttccaaacccttttaaagtaaagaaaatttatgaaaactgtcataattataagaattggtgtgtttggagttgagcatttccccccctgccatttgtctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG