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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGTAAAGATTTCTTCCCACAACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttagaagttcgtgccttggtggtattttctattatcgtagtattccataggatatgctacttatatttattagctgctcataccttttcatcat...

Basic information

species Oryza sativa
transcript LOC_Os06g33710.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g33710.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G047867_T01 (Zea mays), 5'ss of exon 7
GTCTGTAAAGATTTCTTCCCACAACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttagaagttcgtgccttggtggtattttctattatcgtagtattccataggatatgctacttatatttattagctgctcataccttttcatcat-----------------------------------------------
|| |  ||||| ||||| ||| |  ||||  |||||||||||||||| ||||| | ||||||||||||||| |||||||| | ||| | || ||| ||||||| ||| ||| |  ||   |  |  |||||||||| |||  | ||||| |||  |    || || |                                                     
GTTTCCAAAGAATTCTTTCCAAACTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaaaagctggtacct-ggtggtactttatatgactgtgacaggctgtaggatatgccactattgtttat-agcctcaggcactttgtttctgctggtcttgatctcttatagttcatagtatacttgctattttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33686636|gb|CF314875.1|CF314875
EST:     ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACG                         CTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
genomic: ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttag ... tattttgcagCTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
EST: gi|29681267|gb|CB677542.1|CB677542
EST:     ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACG                         CTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
genomic: ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttag ... tattttgcagCTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
EST: gi|29678039|gb|CB674314.1|CB674314
EST:     ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACG                         CTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
genomic: ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttag ... tattttgcagCTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
EST: gi|29661773|gb|CB658048.1|CB658048
EST:     ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACG                         CTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
genomic: ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttag ... tattttgcagCTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
EST: gi|29674257|gb|CB670532.1|CB670532
EST:     ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACG                         CTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
genomic: ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttag ... tattttgcagCTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
EST: gi|38468529|gb|CF952660.1|CF952660
EST:     ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACG                         CTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
genomic: ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttag ... tattttgcagCTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
EST: gi|58690531|gb|CK079218.1|CK079218
EST:     A-TATCTGT-GGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACG                         CTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
genomic: ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttag ... tattttgcagCTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
EST: gi|29660327|gb|CB656602.1|CB656602
EST:     ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACG                         CTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG
genomic: ACTATCTGTTGGATTCAAAGATCCCCGTGTTCAACTTCATGTTGGTGACGgtatgtttag ... tattttgcagCTGTGGATTTCTTGAGAAATGCCCCTGAAGGGAAATATGATGCTATCATTG