1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCAAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgatattttgttgtagcaaatcaaaagtattacatcttttattctttcatgatttaagtgatattaccaaattattctgtttttaaatagcctatcatgaattgaaaatccttctgcag
species | Oryza sativa |
transcript | LOC_Os06g20370.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGG GATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTEST: gi|3760183|gb|C97441.1|C97441
genomic: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgat ... ccttctgcagGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGT
EST: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGG GATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTEST: gi|88583042|gb|CI699517.1|CI699517
genomic: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgat ... ccttctgcagGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGT
EST: ATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGG TATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTEST: gi|58668066|gb|CK056752.1|CK056752
genomic: ATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgat ... ccttctgcagGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGT
EST: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGG GATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTEST: gi|218497048|gb|FG946045.1|FG946045
genomic: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgat ... ccttctgcagGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGT
EST: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGG GATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCCAACGTEST: gi|58597733|gb|CK008261.1|CK008261
genomic: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgat ... ccttctgcagGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGT
EST: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGG GATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTEST: gi|88586562|gb|CI704268.1|CI704268
genomic: GATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgat ... ccttctgcagGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGT
EST: ATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGG TATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGT
genomic: ATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgat ... ccttctgcagGATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAAGGAAGAAGCATTGAGTAGAAAAGAAATATTAGACAAAGTTGAAAGATGGATGTCTGCTTGTGAAGAAGAAAGCTGGCTTGAAGATTATAACCGGgtaagatgatattttgttgtagcaaatcaaaagtattacatcttttattctttcatgatttaagtgatattaccaaattattctgtttttaaatagcctatcatgaattgaaaatccttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA