1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGAGGTTAGTGGTGACAGAGAAGTTCAGAGGACTATGTTGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatatattaatatttgtttctttgttgcatgccgacatgcatgtactgattatccctgccctgatggtttagttgagcacttgatcttttttgat...
species | Oryza sativa |
transcript | LOC_Os06g07630.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAG GTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCEST: gi|88326087|gb|CI651141.1|CI651141
genomic: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatat ... tattggtcagGTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGC
EST: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAG GTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGAEST: gi|2427528|gb|C71991.1|C71991
genomic: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatat ... tattggtcagGTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGA
EST: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAG GTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGAEST: gi|86435620|gb|CI106853.1|CI106853
genomic: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatat ... tattggtcagGTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGA
EST: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAG GTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGAEST: gi|88829402|gb|CI074272.1|CI074272
genomic: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatat ... tattggtcagGTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGA
EST: CGATGGATTTAGTAGTGACGAGCGGATAAAG GTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGAEST: gi|89168249|gb|CI109453.1|CI109453
genomic: CGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatat ... tattggtcagGTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGA
EST: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAG GTCATAGCGGCAACGAATCGTGCTGACATTCGGGATCCTGCTTTGATGCGAEST: gi|163918277|gb|EG713191.1|EG713191
genomic: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatat ... tattggtcagGTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGA
EST: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAG GTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGA
genomic: TGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatat ... tattggtcagGTCATAGCGGCAACGAATCGTGCTGACATTCTTGATCCTGCTTTGATGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGTTAGTGGTGACAGAGAAGTTCAGAGGACTATGTTGGAATTGCTGAACCAACTCGATGGATTTAGTAGTGACGAGCGGATAAAGgttaggatatattaatatttgtttctttgttgcatgccgacatgcatgtactgattatccctgccctgatggtttagttgagcacttgatcttttttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgcc