1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTTTGTTTGATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccagatcttttaggagaagtaccaattctgcaattcattacagtcaaatgtttatttgccaaatgaaatctgatagcgaatggtacattttgca...
species | Oryza sativa |
transcript | LOC_Os06g06820.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAG ATGGTATTTCCATGTATTTTTGATGAGACTCACGCCTTACGACCCCTGAAGEST: gi|87018040|gb|CI275854.1|CI275854
genomic: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccag ... cattatgcagATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
EST: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAG ATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAGEST: gi|86497289|gb|CI139922.1|CI139922
genomic: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccag ... cattatgcagATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
EST: TTACTGGAGAG ATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAGEST: gi|86858904|gb|CI275118.1|CI275118
genomic: TTACTGGAGAGgtacacccag ... cattatgcagATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
EST: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAG ATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAGEST: gi|87029615|gb|CI257410.1|CI257410
genomic: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccag ... cattatgcagATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
EST: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAG ATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAGEST: gi|112786319|gb|EE590521.1|EE590521
genomic: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccag ... cattatgcagATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
EST: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAG ATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAGEST: gi|88344031|gb|CI638766.1|CI638766
genomic: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccag ... cattatgcagATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
EST: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAG ATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAGEST: gi|88569436|gb|CI660611.1|CI660611
genomic: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccag ... cattatgcagATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
EST: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAG ATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAGEST: gi|88573704|gb|CI665473.1|CI665473
genomic: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccag ... cattatgcagATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
EST: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAG ATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
genomic: ATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccag ... cattatgcagATGGTATTTCCATGTATTTTTGATGAGATTCACGCCTTACGACCCCTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAAAATGGTCGGCTCACAAGATTGGCAGTGAGTGTGAAAGTTTGTTTGATCCTATCAAGGCTATAAAAGAAGGCAGACCTGTTTATTTTACTGGAGAGgtacacccagatcttttaggagaagtaccaattctgcaattcattacagtcaaatgtttatttgccaaatgaaatctgatagcgaatggtacattttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA