1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATGAGCCTGAAGAGACCGTTCTTGTAAATGGGAAAGAGGGTGAGGAACAGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaaaaacccaaattttgtctgcggtgattcactagctttgcccccaaattataggactgttgaacctttctagtacttcagtttttgaaaaag...
species | Oryza sativa |
transcript | LOC_Os06g05180.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGEST: gi|86838811|gb|CI330259.1|CI330259
genomic: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: CCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGEST: gi|11370679|gb|AU164984.1|AU164984
genomic: CCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: AGTGGGGTACGAACAATGAAGGAA-TTCGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGEST: gi|319908442|gb|HS977570.1|HS977570
genomic: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: GGTACCAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCCGTGCCGTTTTGCATTGGEST: gi|25803773|gb|CA759734.1|CA759734
genomic: GGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: AGTGGGGTACGAACAATGAAGGAACTTTGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGEST: gi|319908460|gb|HS977588.1|HS977588
genomic: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: GGTACNAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCCGTGCCGTTTTGCATTGG
genomic: GGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGAGCCTGAAGAGACCGTTCTTGTAAATGGGAAAGAGGGTGAGGAACAGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaaaaacccaaattttgtctgcggtgattcactagctttgcccccaaattataggactgttgaacctttctagtacttcagtttttgaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccccc