1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCAGTGACTATGACCAGCTGGGGGCCCCTTCAAGTGGTGGCAACAGTCCCCTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattggcattagccagatagttttgtaactttaacagttccataattgcgcataatcagaaaaaagatatttaaagtgacaagtgatagatcaagg...
species | Oryza sativa |
transcript | LOC_Os06g02130.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAG GCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGAEST: gi|29622508|gb|CB627519.1|CB627519
genomic: AATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattgg ... cttgtcccagGCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
EST: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAG GCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGAEST: gi|29678897|gb|CB675172.1|CB675172
genomic: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattgg ... cttgtcccagGCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
EST: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAG GCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGAEST: gi|29660245|gb|CB656520.1|CB656520
genomic: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattgg ... cttgtcccagGCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
EST: CTGGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAG GCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGAEST: gi|29664576|gb|CB660851.1|CB660851
genomic: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattgg ... cttgtcccagGCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
EST: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAG GCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGAEST: gi|29627697|gb|CB632708.1|CB632708
genomic: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattgg ... cttgtcccagGCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
EST: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAG GCAACCATGTTTCCGCGACATGCCATTTGTTTTTGTGCTCAACAAGTTCGAEST: gi|29622065|gb|CB627076.1|CB627076
genomic: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattgg ... cttgtcccagGCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
EST: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAG GCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGAEST: gi|29667762|gb|CB664037.1|CB664037
genomic: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattgg ... cttgtcccagGCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
EST: AAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAG GCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGAEST: gi|38478151|gb|CF962284.1|CF962284
genomic: AAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattgg ... cttgtcccagGCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
EST: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAG GCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
genomic: CTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattgg ... cttgtcccagGCAACCATGTTTCCGCGACATGCCATTTGTTCTTGTGCTCAACAAGTTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGTGACTATGACCAGCTGGGGGCCCCTTCAAGTGGTGGCAACAGTCCCCTTGTGAATAAGATGATCCAAAGCAGGGACTTGTTTGAGGCTACAATCAGgtactattggcattagccagatagttttgtaactttaacagttccataattgcgcataatcagaaaaaagatatttaaagtgacaagtgatagatcaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa