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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATGGATTAGCCTTCATTGAGTTTACTCTGGATGACCGTAGCCCTATGTCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAAgtaaactctttcttcatgactcatgcctgaagtgcatataaatcctttaatagtacacatctctacatatccatataccctaaacagtgccttttatttt...

Basic information

species Oryza sativa
transcript LOC_Os06g02130.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g02130.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G429113_T01 (Zea mays), 5'ss of exon 7
GGAATGGATTAGCCTTCATTGAGTTTACTCTGGATGACCGTAGCCCTATGTCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACAC---TAAACAAgtaaactctttcttcatgactcatgcctgaagtgcatataaatcctttaatagtacacatctctacatatccatataccctaaa-cagtgccttttatttt
   | ||||| ||||||||||| || ||  |||||||||| |||||||||||||||   |     ||||| || ||  |  || ||||   ||   |||||||||| | ||| |||||    ||| |||        |  ||   |||| |  ||||     |  |  ||||| | | || |||    |||             
---ACGGATTGGCCTTCATTGACTTCACCTTGGATGACCGGAGCCCTATGTCAGAATCCTTTGGCGACAACCACGATGCGTACCCTCAACAACCAGTAAACAAgtacagtctatcttccccgctc-tgctcacctgtcgaattcttcctctcctagt-tgtcttgcctcatatgcttctatcctctctcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218497713|gb|FG968286.1|FG968286
EST:     TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAA                         ATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
genomic: TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAAgtaaactctt ... tccttttcagATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
EST: gi|29667807|gb|CB664082.1|CB664082
EST:     TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAA                         ATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
genomic: TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAAgtaaactctt ... tccttttcagATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
EST: gi|29667761|gb|CB664036.1|CB664036
EST:     TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTANACAA                         ATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
genomic: TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAAgtaaactctt ... tccttttcagATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
EST: gi|38478151|gb|CF962284.1|CF962284
EST:     TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAA                         ATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
genomic: TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAAgtaaactctt ... tccttttcagATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
EST: gi|2443005|gb|C74776.1|C74776
EST:     TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAA                         ATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
genomic: TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAAgtaaactctt ... tccttttcagATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
EST: gi|33683464|gb|CF311703.1|CF311703
EST:     TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAA                         ATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG
genomic: TCAGAAATGTACACTGACAATCATGAGCCTCACTCTCAGACACTAAACAAgtaaactctt ... tccttttcagATATCAGCTGATTAGAGTAAGTGCCAAGGGAATGAATGAGGGATGCAAGTG