1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATGTGAGGTGTACAATCTGGGCACTGGAAAGGGGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaacaggacaagtgtacttcctcttaattactataataatcattaattcccaacttgtcctttgcttttgttgatcatatgatgtcgtcctaacaataataatgccaacttgaacag
species | Oryza sativa |
transcript | LOC_Os05g51670.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAAGCCTGGAGATGCCGAGATCGTTEST: gi|218505351|gb|FG968507.1|FG968507
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTT
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTTEST: gi|218491365|gb|FG953092.1|FG953092
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTT
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGTGATGCCGAGATCGTTEST: gi|33679559|gb|CF307798.1|CF307798
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTT
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTTEST: gi|218489340|gb|FG957646.1|FG957646
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTT
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTTEST: gi|58590991|gb|CF989299.1|CF989299
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTT
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTTEST: gi|33686980|gb|CF315219.1|CF315219
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTT
EST: GGACATCTGTGCTGGGAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGEST: gi|33681007|gb|CF309246.1|CF309246
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTG
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTTEST: gi|218495689|gb|FG969806.1|FG969806
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTT
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTTEST: gi|218498936|gb|FG953341.1|FG953341
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTT
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAGGEST: gi|33661837|gb|CF292804.1|CF292804
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGG
EST: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAG AAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGA-ATGCCGAGATCGTT
genomic: GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaac ... acttgaacagAAAATCCCGCTTGTATTTGCTGGACGAAGGCCTGGAGATGCCGAGATCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGAGGTGTACAATCTGGGCACTGGAAAGGGGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGgtaaactaacaggacaagtgtacttcctcttaattactataataatcattaattcccaacttgtcctttgcttttgttgatcatatgatgtcgtcctaacaataataatgccaacttgaacag
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