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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAGgtcagctgttgttaaatccgttccattcctattttttgcatgttcatttcatttattgatgccatgatactgcttgtaaaacag

Basic information

species Oryza sativa
transcript LOC_Os05g51490.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51490.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G868855_T01 (Zea mays), 5'ss of exon 1
GAGCACCCAGACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAGgtcagctgttgttaaatccgttccattcctattttttgcatgttcatttcatttattgatgccatgatactgcttgtaaaacag
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GAGCATCCAGATATTGTTGTCCAGCTTGTCGACCTCATTGGTATCACATCAATAATGGAGgtaagcagttattgaactcattccccatctagtttg-gtgagtgc-ttttggttggtgtt--catcaaattgattgtaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88359820|gb|CI622510.1|CI622510
EST:     ACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAG                         GTTCTGATTCGACTGATAGGTGCTGATGAGACCATATAATCGAATTATGCT
genomic: ACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAGgtcagctgtt ... tgtaaaacagGTTCTGATTCGACTGATAGGTGCTGATGAGACCATATACTCGAATTATGCT
EST: gi|58652691|gb|CK041371.1|CK041371
EST:     CTCAATAATGGAG                         GTTCTGATTCGACTGATAGGTGCTGATGAGACCATATACTCGAATGATGCT
genomic: CTCAATAATGGAGgtcagctgtt ... tgtaaaacagGTTCTGATTCGACTGATAGGTGCTGATGAGACCATATACTCGAATTATGCT
EST: gi|29669887|gb|CB666162.1|CB666162
EST:     ACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAG                         GTTCTGATTCGACTGATAGGTGCTGATGAGACCATATACTCGAATTATGCT
genomic: ACATTGTTGTCCATCTTGTTGATCTCATCGGCACCACCTCAATAATGGAGgtcagctgtt ... tgtaaaacagGTTCTGATTCGACTGATAGGTGCTGATGAGACCATATACTCGAATTATGCT