Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGGGGACCGGTTCAGTGAAAATGAGGTCCTGTGCATGCTGCATGCAGCAAACCTGTGCATACGGCGTGACCCTCATTCGAGGCCTCGCATGTCCCATgttagccacacaccattcttctccacatttctcagtacctatcacctaagcttgatttacatctgtactaataatgatgtttctcctcgcatgtatgaaaag

Basic information

species Oryza sativa
transcript LOC_Os05g51190.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51190.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G142068_T01 (Zea mays), 5'ss of exon 8
GCTAGGGGACCGGTTCAGTGAAAATGAGGTCCTGTGCATGCTGCATGCAGCAAACCTGTGCATACGGCGTGACCCTCATTCGAGGCCTCGCATGTCCCATgttagccacacaccattcttctccacatttctcagtacctatcacctaagcttgatttacatctgtactaataatgatgtttctcctcgcatgtatgaaaag
 || || |  || ||| | || || ||||||   |||||| |||| || ||||||||||||||||||||||||||||||   ||||| |||||||||||||| |     | |  | |  |    | | |  |   | |||  | ||||    | || || || | |  |  | | |      | ||| |  | | || ||  
CCTGGGAGGGCGCTTCTGCGAGAACGAGGTCTACTGCATGGTGCACGCGGCAAACCTGTGCATACGGCGTGACCCTCATCTCAGGCCGCGCATGTCCCATgtaataataataataataat----aaagtcattcattcct-ccgccta----tcatgtatatatatggtgctcacg----cacgccttgtctctctggaag-