1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggggggttgatcttacacactaaaagaaatgtaaaaaaaaaatctatgatgtttgagggacaacagattcattcgctgagaaaaatatcaatgaaaacagttggtttgaataacatgatatggaagatgcaaaaaaggtaagtatgagagtaaccttatctttgcatcttctttttccttgagcag
species | Oryza sativa |
transcript | LOC_Os05g46270.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAG GTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGGEST: gi|58679163|gb|CK067850.1|CK067850
genomic: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggg ... ccttgagcagGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
EST: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAG GTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGGEST: gi|27578355|gb|CB001050.1|CB001050
genomic: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggg ... ccttgagcagGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
EST: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAG GTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGGEST: gi|58603675|gb|CK014203.1|CK014203
genomic: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggg ... ccttgagcagGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
EST: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAG GTCACGAAGCAGCACAATGAAGAATGTACACGACTATTAAGACTTATGGGGEST: gi|58661414|gb|CK050094.1|CK050094
genomic: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggg ... ccttgagcagGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
EST: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAG GTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGGEST: gi|66913640|gb|CX100488.1|CX100488
genomic: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggg ... ccttgagcagGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
EST: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAG GTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGGEST: gi|58668444|gb|CK057130.1|CK057130
genomic: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggg ... ccttgagcagGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
EST: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAG GTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGGEST: gi|58682239|gb|CK070926.1|CK070926
genomic: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggg ... ccttgagcagGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
EST: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAG GTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGGEST: gi|27577153|gb|CA999847.1|CA999847
genomic: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggg ... ccttgagcagGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
EST: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAG GTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
genomic: GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggg ... ccttgagcagGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGgtgagaaggggggttgatcttacacactaaaagaaatgtaaaaaaaaaatctatgatgtttgagggacaacagattcattcgctgagaaaaatatcaatgaaaacagttggtttgaataacatgatatggaagatgcaaaaaaggtaagtatgagagtaaccttatctttgcatcttctttttccttgagcag
AAGGAG
- AGGAGA
- GGAGAT
- - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - AAGAGA