1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGGCAGTCAGCAGAACCAGTTCTTTTTCCGCCCCACAGATAATATCCAGTCTTACAGTTCTCCACTAAACAGAGCTAATAGTGCTCCGGTTAATAGCCAGgttagctctctgcttgtatattgtgtaagaagaactatttccattgagcaattgtattagacctttgttttgctgcatgattattttcag
species | Oryza sativa |
transcript | LOC_Os05g45840.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTACAGTTCTCCACTAAACAGAGCTAATAGTGCTCCGGTTAATAGCCAG TTGTGGGGAGCCGCATCGCAAGCATCAATACAAGGGAGCCATGCTCTTCCTEST: gi|8954449|gb|BE228360.1|BE228360
genomic: CTTACAGTTCTCCACTAAACAGAGCTAATAGTGCTCCGGTTAATAGCCAGgttagctctc ... ttattttcagTTGTGGGGAGCCGCATCGCAAGCATCAATACAAGGGAGCCATGCTCTTCCT
EST: CTTACAGTTCTCCACTAAACAGANCTAATAGTGCTCCGGTTAATAACCAG TTGTGGGGAGCCGCATCGCAAGCATCAATACAAGGGAGCCATGCTCTTCCT
genomic: CTTACAGTTCTCCACTAAACAGAGCTAATAGTGCTCCGGTTAATAGCCAGgttagctctc ... ttattttcagTTGTGGGGAGCCGCATCGCAAGCATCAATACAAGGGAGCCATGCTCTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCAGTCAGCAGAACCAGTTCTTTTTCCGCCCCACAGATAATATCCAGTCTTACAGTTCTCCACTAAACAGAGCTAATAGTGCTCCGGTTAATAGCCAGgttagctctctgcttgtatattgtgtaagaagaactatttccattgagcaattgtattagacctttgttttgctgcatgattattttcag
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