1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAGgtgtttgcttcactccattgctcctctttgttgtttcttggggaatgcatgacaaagtttctgaataatgtgcag
species | Oryza sativa |
transcript | LOC_Os05g45420.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAG GCGACAGTTGCCTACTATTTACTAEST: gi|40488690|gb|BX899031.1|BX899031
genomic: TTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAGgtgtttgctt ... taatgtgcagGCGACAGTTGCCTACTATTTACTA
EST: TTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAG GCGACAGTTGCCTACTATTTACTATTGGACAATAGGCTGCGCACAACCAGTEST: gi|13420630|gb|AU174720.1|AU174720
genomic: TTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAGgtgtttgctt ... taatgtgcagGCGACAGTTGCCTACTATTTACTATTGGACAATAGGCTGCGCACAACCAGT
EST: TTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAG GCGACAGTTGCCTACTATTTACTATTGGACAATAGGCTGCGCACAACCAGTEST: gi|38481090|gb|CF965179.1|CF965179
genomic: TTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAGgtgtttgctt ... taatgtgcagGCGACAGTTGCCTACTATTTACTATTGGACAATAGGCTGCGCACAACCAGT
EST: TGACAAGAATCAGCTAATCGAATCACTTCACAATGAGACTGCAAAACGAG GCGACAGTTTGCCTACTATTTACTATTGGACAATAGGCTGCGCACAACCAG
genomic: TGACAAGAATCAGCTAATCGAATCACTTCACAA-GAGACTGCAAAACGAGgtgtttgctt ... taatgtgcagGCGACAG-TTGCCTACTATTTACTATTGGACAATAGGCTGCGCACAACCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGACGATGAAACTCTGAATGATGTTATCAATATGGGGTTTGACAAGAATCAGCTAATCGAATCACTTCACAAGAGACTGCAAAACGAGgtgtttgcttcactccattgctcctctttgttgtttcttggggaatgcatgacaaagtttctgaataatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA