1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCTATATCATTGGAGGAGATGGAACACAGAAGGGTGCATATGAGATCTTCAAGgtaatttaccactgtggtacaaccgtacaagtgctatgtatgctgtttgctgaaagaatgtgataatagatcctattcatcaatgcattgcagtagcatacggtatatctatttaaatattattttatcgttacctcattgttttcatattggtggcag
species | Oryza sativa |
transcript | LOC_Os05g44922.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATATCATTGGAGGAGATGGAACACAGAAGGGTGCATATGAGATCTTCAAG GAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACAEST: gi|571842|gb|D41353.1|D41353
genomic: ATATCATTGGAGGAGATGGAACACAGAAGGGTGCATATGAGATCTTCAAGgtaatttacc ... ttggtggcagGAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACA
EST: TATCATTGGAGGAGATGGAACACAGAAGGGTGCATATTGAGATCTTCAAG GAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACA
genomic: TATCATTGGAGGAGATGGAACACAGAAGGGTGCATAT-GAGATCTTCAAGgtaatttacc ... ttggtggcagGAAATCCGAAAACGTGGGCTAAAGGTTTCTGTTGCTGGGATTCCCAAGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTATATCATTGGAGGAGATGGAACACAGAAGGGTGCATATGAGATCTTCAAGgtaatttaccactgtggtacaaccgtacaagtgctatgtatgctgtttgctgaaagaatgtgataatagatcctattcatcaatgcattgcagtagcatacggtatatctatttaaatattattttatcgttacctcattgttttcatattggtggcag
- - - - - TTGGAG
- - - - - TGGAGG
- - - - - - GGAGGA
- - - - - - GAGGAG
- - - - - - - AGGAGA
- - - - - - - GGAGAT
- - - - - - - - GAGATG
- - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - GAGATC