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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCCGTGTCTTGAACAATTATGGACAGATCGAATCATTCTCTGCTTTCAGCAGTATTTACAACAATTCTGGCCTTTTTGGAATACATGCAACCACTgtaagtctcttttggagcataaccaatgatatgttttcccttctatattcaagcaatgaacagaatcaaatctgcttgtgaattctttcccttttttttt...

Basic information

species Oryza sativa
transcript LOC_Os05g44916.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g44916.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G005036_T01 (Zea mays), 5'ss of exon 8
ATCTCCGTGTCTTGAACAATTATGGACAGATCGAATCATTCTCTGCTTTCAGCAGTATTTACAACAATTCTGGCCTTTTTGGAATACATGCAACCACTgtaag--tctcttttggagcataaccaatgatatgttttcccttctatattcaagcaatgaaca-gaatcaaatctgcttgtg-aattctttcccttttttttt
||||||||||||||| ||| |    |||||| |||||||||||||||||||  ||  | || |||||||| ||||||||||||||  |||||  |||||||||  |||||  ||||||||      |  ||     ||    || |  ||| |  | |  |  |  |||  ||   | |   |  ||    || |       
ATCTCCGTGTCTTGACCAACTTCCAACAGATTGAATCATTCTCTGCTTTCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACTgtaagcttctctcctggagcatcctttttattaaaacctcatgccttt--tcagggcacgtccgtgtttcacgtcatttagcatagctccggaccctgacgc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|286522|gb|D15329.1|D15329
EST:     TCAGCAGTATTTACAACAATTCTGGCCTTTTTGGAATACATGCAACCACT                         AACCCAGATTTTGTATCAAGTGCTGTGGATTTTGGCAGCAAGGGA
genomic: TCAGCAGTATTTACAACAATTCTGGCCTTTTTGGAATACATGCAACCACTgtaagtctct ... aatttaacagAACCCAGATTTTGTATCAAGTGCTGTGGATTT-GGCAGCAAGGGA