1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGGAGAGATAGTGCGAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGgtatatttctgtaccatctctcttttgatcttcattccttccttttgtcatggcaaaagccgttttactttgttgttaactatcatgctggtcaagtttt...
species | Oryza sativa |
transcript | LOC_Os05g44760.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAG TEST: gi|58667921|gb|CK056607.1|CK056607
genomic: TTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGgtatatttct ... tgtatcacag-
EST: TTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAG TEST: gi|58695929|gb|CK084616.1|CK084616
genomic: TTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGgtatatttct ... tgtatcacag-
EST: TTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAG GACACCGGATATGTCAGCCATGCATCATGACTCGTCACATGACCTTAAAACEST: gi|27576640|gb|CA999334.1|CA999334
genomic: TTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGgtatatttct ... tgtatcacagGACACCGGATATGTCAGCCATGCATCATGACTCGTCACATGACCTTAAAAC
EST: TTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAG GACACCGGATATGTCAGCCATGCATCATGACTCGTCACATGACCTTAAAAC
genomic: TTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGgtatatttct ... tgtatcacagGACACCGGATATGTCAGCCATGCATCATGACTCGTCACATGACCTTAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAGAGATAGTGCGAAGAATCTTGCTGAAGCTTGCTCATGATGCAGCTTTGTTTGGGGATGTTGTTCCATCTAAGCTAGAGCAACCGTTTGTACTAAGgtatatttctgtaccatctctcttttgatcttcattccttccttttgtcatggcaaaagccgttttactttgttgttaactatcatgctggtcaagtttt
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