Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTATTATCTGGTTGCTTGCTATTATCTACTTCATATCTGGTGTACCTGGTGCTTATGTGTTATGGTACCGCCCTCTTTATAATGCAATGAGgttggatatattaaatgagcattgttggctacacaactttttcaccttttaaaatatctaatacgctagtgtcttgttcttttttcaatgcctgttacag

Basic information

species Oryza sativa
transcript LOC_Os05g42330.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G174730_T01 (Zea mays), 5'ss of exon 7
GTGTTATTATCTGGTTGCTTGCTATTATCTACTTCATATCTGGTGTACCTGGTGCTTATGTGTTATGGTACCGCCCTCTTTATAATGCAATGAGgttggatatattaaatgagcattgttggctacacaactttttcacc-ttttaaaatatctaatacgctagtgtcttgttcttttttcaatgcctgttacag
||||||| |||||| ||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||| || ||||||||||||||||||||||||  |||||  |   | |  |     |   |||  ||||||||| ||| ||  |   | |||  |   | ||||||| |  ||| |||  ||| | |||
GTGTTATGATCTGGCTGCTTGCCATTATCTACTTCATATCTGGTGCGCCTGGGGCTTATGTGTTATGGTATCGACCTCTTTATAATGCAATGAGgttgtttatatgcatccatcccttaacacagtacatttttttcaccatttcaatgttcattataatcatatatcttgtt-tcgtttgaatatctgcttcag

upper sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G100809_T01 (Zea mays), 5'ss of exon 7
GTGTTATTATCTGGTTGCTTGCTATTATCTACTTCATATCTGGTGTACCTGGTGCTTATGTGTTATGGTACCGCCCTCTTTATAATGCAATGAGgttggatatattaaatgagcattgttggctacacaactttttcacc-ttttaaaatatctaatacgctagtgtcttgttcttttttcaatgcctgttacag
||||||| |||||| ||||||| ||||||||||||||||||||||| || || ||||||||||||||||| || ||||||||||||||||||||||||  |||||  |     |||   |   || |  ||||||||| | ||| ||  |  ||  |   |   | ||||||| || ||| |||| ||| |  ||
GTGTTATGATCTGGCTGCTTGCCATTATCTACTTCATATCTGGTGTGCCCGGGGCTTATGTGTTATGGTATCGGCCTCTTTATAATGCAATGAGgttgtttatatggatc---catctcttaatatattactttttcaacgtttcaatgttccttgtgatcatatatcttgtt-ttatttgaatgtctgctttag

upper sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA06G45160.1 (Glycine max), 5'ss of exon 8
GTGTTATTATCTGGTTGCTTGCTATTATCTACTTCATATCTGGTGTACCTGGTGCTTATGTGTTATGGTACCGCCCTCTTTATAATGCAATGAGgttggatatattaaatgagcattgttggctacacaactttttcaccttttaa----aatatctaatacgctagtgtcttgttcttttttcaatgcctgttacag-------
||   |  |||||||| |||||||||||||| || || |||||||  || ||  | |||||||| ||||| ||||||||||||  ||| ||||||| |    | ||  || ||  ||  ||      ||| |||| ||  ||  ||     ||||||  | |   ||| |      |  |||   |  |     | |        
GTCCAACCATCTGGTTTCTTGCTATTATCTATTTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGgtag----tgttcgatcagatttaatg------caatttttgcaatttagaatagggatatctg-ttcaagagttttacagccgatttgttaaactgaaaagaaaagaaaa

upper sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 7
lower sequence: AT2G20840.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGTTATTATCTGGTTGCTTGCTATTATCTACTTCATATCTGGTGTACCTGGTGCTTATGTGTTATGGTACCGCCCTCTTTATAATGCAATGAGgttggatatattaaatgagcattgttggctacacaactttttcaccttttaaaatatctaatacgctagtgtcttgttcttttttcaat-gcctgttacag--------------------------------------------------------------
||   |  || ||||| || ||||||||||| |||||||| || || ||||| || |||||  | ||||| ||||||||||||  ||| |||||||     ||   |  | ||  || |    ||   || | | | | ||  ||     ||   |   |   | | | |          ||  |  | || |||                                                              
GTCCAACAATATGGTTTCTAGCTATTATCTATTTCATATCAGGGGTTCCTGGAGCGTATGTTATGTGGTATCGCCCTCTTTATCGTGCCATGAGgt-attcatgccacttaagatttttccttta---aaatatcttatctgctactgcgtcgtgtgttcctttatttagagggaaaacaaaaagagtattccagatagcatcgtagttaagagtcaaaactttcattgagatgtgtgttgatttggttgtgtgcag

upper sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 8
GTGTTATTATCTGGTTGCTTGCTATTATCTACTTCATATCTGGTGTACCTGGTGCTTATGTGTTATGGTACCGCCCTCTTTATAATGCAATGAGgt---tggatatattaaatgagcattgttggctacacaactttttcaccttttaaaatatctaatacgctagtgtcttgttcttttttcaat--gcctgttacag
| || |  |||||||| ||||||||||||||||||||| | || || || || ||||||||||| |||||||| || ||||||  |||  | ||||   |   | |  |   || |  | | || ||  |   |||||  ||     ||| |    ||| | | | |  | ||||  ||| | ||   |  ||||    
GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAGGAGCTTATGTGTTGTGGTACCGTCCACTTTATCGTGCTTTTAGgtatttccttctccttcctgggtgtggctgtctgtat--cttttggactcagcaaagtcctcaattc-caattcacatgtttatttgttaaaaagaatgttgt--

upper sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 7
GTGTTATTATCTGGTTGCTTGCTATTATCTACTTCATATCTGGTGTACCTGGTGCTTATGTGTTATGGTACCGCCCTCTTTATAATGCAATGAGgttggatatattaaatgagcattgttggctacacaactttttcaccttttaaaatatctaatacgctagtgtcttgttcttttttcaatg--cctgttacag----
||   |  || ||||| ||||| || ||||||||| |||| || || || || ||||||||||| ||||| || |||||||||  ||| |||||||   || ||     ||   |||     |   ||  |  ||  | | |  | | ||   | ||    ||  |     |  |     |  |  ||||| ||      
GTCCGACAATTTGGTTTCTTGCCATCATCTACTTCTTATCAGGGGTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAGgtactattta-----tggttattccaaacatgactcccattatatcatccacactagaca-tatatcagacttccaattgtaggggatgggtcctgtcacgccatt