Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACACCGATTTGGCTTCGTTGAAGTTTTTAAGTATTGAAAGTGGTGGCTCATTGTTTCTGTATACAAATACAGACGATTCAACACTTCCCCAGGACATgtgagcttgatcgtttgtttgtcttttttttttctgcacttcattcaaattccatattccaaattttctgatccacatgaatggcctttgccccttggtttgccttttcctctaacag

Basic information

species Oryza sativa
transcript LOC_Os05g37120.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37120.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G106140_T01 (Zea mays), 5'ss of exon 7
AATACACCGATTTGGCTTCGTTGAAGTTTTTAAGTATTGAAAGTGGTGGCTCATTGTTTCTGTATACAAATACAGACGATTCAACACTTCCCCAGGACATgtgagcttgatcgtttgtttgtcttttttttttctgcacttcattcaaattccatattccaaattttctgatccacatgaatggcctttgccccttggtttgccttttcctctaacag
||||||| |||||||||||  |||||||||||||||||||||||||||| |   | ||||| ||| ||||| |||| |||||||||||||| || |||||||  ||||| | |  ||  | |  | | || |       ||||   ||||||      |||||||| || ||    |||||||  |||| |  | |   ||||  || || | |||||
AATACACGGATTTGGCTTCACTGAAGTTTTTAAGTATTGAAAGTGGTGGATATCTATTTCTTTATGCAAATGCAGATGATTCAACACTTCCTCAAGACATgtatgcttggttgaatgaatattctgtgttcta------ttcaga-aaattctgacagccaaatttcctaataattatgaatgatcttttcttcctttcttgcaattcccacaaacag

upper sequence: LOC_Os05g37120.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G141735_T01 (Zea mays), 5'ss of exon 7
AATACACCGATTTGGCTTCGTTGAAGTTTTTAAGTATTGAAAGTGGTGGCTCATTGTTTCTGTATACAAATACAGACGATTCAACACTTCCCCAGGACATgtgagcttgatcgtttgtttgtcttttttttttctgcacttcattcaaattccatattccaaattttctgatccacatgaatggcctttgccccttggtttgccttttcctctaacag
||||||| |||||||||||  |||||||||||||||| ||||||||||| || || ||||| ||| ||| |||||| ||||||||| ||||||| |||||||  ||||| | |  ||  | | ||| | |  |||    ||||   |||||  |    |||||||| || ||    |||||||| |||| |  | |    |||   | || || ||||
AATACACTGATTTGGCTTCACTGAAGTTTTTAAGTATCGAAAGTGGTGGATCTTTATTTCTTTATGCAAGTACAGATGATTCAACAGTTCCCCAAGACATgtatgcttgcttgaatgaatat-tttatgtgctcta---ttcaga-aaattataacagccaaatttcctaataagtatgaatggtcttttcttcctttcctgcaactcccactgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674495|gb|CB670770.1|CB670770
EST:     TCATTGTTTCTGTATACAAATACAGACGATTCAACACTTCCCCAGGACAT                         ATATCGCTTATTGAGTAGACCCTATGCATTTGGTTGTGTTCTAAGGTTGAG
genomic: TCATTGTTTCTGTATACAAATACAGACGATTCAACACTTCCCCAGGACATgtgagcttga ... cctctaacagATATCGCTTATTGAGTAGACCCTATGCATTTGGTTGTGTTCTAAGGTTGAG
EST: gi|29616493|gb|CB621505.1|CB621505
EST:     TCATTGTTTCTGTATACAAATACAGACGATTCAACACTTCCCCAGGACAT                         ATATCGCTTATTGAGTAGACCCTATGCATTTGGTTGTGTTCTAAGGTTGAG
genomic: TCATTGTTTCTGTATACAAATACAGACGATTCAACACTTCCCCAGGACATgtgagcttga ... cctctaacagATATCGCTTATTGAGTAGACCCTATGCATTTGGTTGTGTTCTAAGGTTGAG