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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAgtataaaaggccttaatttcgtttacgaaatattatctttaattcttaagtacttgagctgaattttcgagtcaatattgcag

Basic information

species Oryza sativa
transcript LOC_Os05g36270.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g36270.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G322953_T03 (Zea mays), 5'ss of exon 6
ATACCAAATAGAGGAAAGATCTATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAgtataaaaggc-------cttaatttcgtttacgaaatattatctttaattcttaagtacttgagctgaattttcgagtcaatattgcag
|||||||  | ||| |||||||||||||| ||||||||||| || ||||| |||||||  |||||||| |||||  |   ||       ||   ||  ||  |  || || ||   | | ||| |||  |     ||||||||||   | |  |   |   
ATACCAAGGAAAGGGAAGATCTATTCAGTCAACGAAGGGAACGCCAAAAACTGGGATGGGCCTACAGCCAAgtacgacgagctagggggctcgtttctgtccaaaaactactactgtgatttcgtaacaagccaggctgaatttt-atgccgtttcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670800|gb|CB667075.1|CB667075
EST:     TATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAA                         GTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAGATCCTT
genomic: TATTCAGTGAACGAAGGGAATGCGAAAAATTGGGATGCTCCTACAGCGAAgtataaaagg ... aatattgcagGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTT