1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTCCCCGAGGATTCACTATGTTCATCCATCATGGTTTGAAGCAGGAAAGCCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagttccttgtaccttctacctgtttctgctggttattcttctgtcaggatacattatgttcagtttagctatggtgatatattcatatcatta...
species | Oryza sativa |
transcript | LOC_Os05g33810.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAG GTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTATEST: gi|29682373|gb|CB678648.1|CB678648
genomic: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagt ... atcatggcagGTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTAT
EST: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAG GTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTATEST: gi|218482951|gb|FG948113.1|FG948113
genomic: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagt ... atcatggcagGTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTAT
EST: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAG GTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTATEST: gi|29619149|gb|CB624161.1|CB624161
genomic: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagt ... atcatggcagGTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTAT
EST: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAG GTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTATEST: gi|88329499|gb|CI648561.1|CI648561
genomic: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagt ... atcatggcagGTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTAT
EST: CCCATCGATCTTATTCTTTGTGGAACTTCTCTTGATCAGCCTAAATTCAG GTCACTTGTGTCATTTGATGGAATGTACTTGAAGCATGGTTGTCGCCGTATEST: gi|88350419|gb|CI653484.1|CI653484
genomic: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagt ... atcatggcagGTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTAT
EST: CCCATCGATCTTATNCTTTGTGGAAGTTCTCTTGATCAGCCTAAATCCAG GTCACTTGTGTCATCTGATGGACTGTACTTGAAGCATGGTTGTCGCCGTATEST: gi|218498191|gb|FG955475.1|FG955475
genomic: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagt ... atcatggcagGTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTAT
EST: CCATCGATCTTATTCTTTNGTGGAAGTTCTCTTGATCAGCCTAAATTCAG GTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTATEST: gi|58662678|gb|CK051364.1|CK051364
genomic: CCATCGATCTTATTCTTT-GTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagt ... atcatggcagGTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTAT
EST: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAG GTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTATEST: gi|58670185|gb|CK058871.1|CK058871
genomic: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagt ... atcatggcagGTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGATTGTCGCCGTAT
EST: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAG GTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGA
genomic: CCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagt ... atcatggcagGTCACTTGTGTCATTTGATGGACTGTACTTGAAGCATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCCCCGAGGATTCACTATGTTCATCCATCATGGTTTGAAGCAGGAAAGCCCATCGATCTTATTCTTTGTGGAAGTTCTCTTGATCAGCCTAAATTCAGgtatgacagttccttgtaccttctacctgtttctgctggttattcttctgtcaggatacattatgttcagtttagctatggtgatatattcatatcatta
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