1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGGAAAATAGGGGAATGGCGGTTTGACAAAAGATCTTATCTTCGTTCACCACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgcttaatatttagtattatttcagtatgactgatgccacttctcttaaacatgattgacctttacatttacaaaattctaaatcaccttgttga...
species | Oryza sativa |
transcript | LOC_Os05g32060.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|86484005|gb|CI126638.1|CI126638
genomic: GGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|88320465|gb|CI523208.1|CI523208
genomic: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|86434069|gb|CI094412.1|CI094412
genomic: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|88226756|gb|CI224741.1|CI224741
genomic: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|89162837|gb|CI099727.1|CI099727
genomic: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|86852843|gb|CI323152.1|CI323152
genomic: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|88462937|gb|CI519849.1|CI519849
genomic: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: AAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|88482349|gb|CI419620.1|CI419620
genomic: AAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|88289621|gb|CI522754.1|CI522754
genomic: CGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: GAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|86484304|gb|CI126937.1|CI126937
genomic: GAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|88503540|gb|CI431046.1|CI431046
genomic: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|88264489|gb|CI368263.1|CI368263
genomic: CACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGG GCCACCCTTGTGAAAATGTTCAATGAAGCCACTGCAAACATTCCAGGGTGEST: gi|88508669|gb|CI436175.1|CI436175
genomic: CCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGT-Ggtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTG
EST: CATTACCTCCTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|89174539|gb|CI110737.1|CI110737
genomic: CATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: CTCCAGGAGTTCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGGEST: gi|88472668|gb|CI409939.1|CI409939
genomic: CTCCAGGAGTTCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
EST: TCCCGAAAGTGTG GCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
genomic: TCCCGAAAGTGTGgtatgtgctt ... gccttttcagGCCACCCTTGTGAAAATGGTCAATGAAGCCACTGCAAACATTCCAGGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGAAAATAGGGGAATGGCGGTTTGACAAAAGATCTTATCTTCGTTCACCACCGCCAAGAAATCTTACATTACCTCCTCCAGGAGTTCCCGAAAGTGTGgtatgtgcttaatatttagtattatttcagtatgactgatgccacttctcttaaacatgattgacctttacatttacaaaattctaaatcaccttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC