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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGGATCATTTTTACTTCGAGATCTGCCTTTTGATGCCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatcttagcctctgtcttgatgagaaccatattttacttctggttagcaatccttactaggcctcagacgacctcaatataaatgtaggattgag...

Basic information

species Oryza sativa
transcript LOC_Os05g29860.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29860.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 8
GGATATGGATCATTTTTACTTCGAGATCTGCCTTTTGATGCCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacc----cat--cttagcct-ctgtcttgatgagaaccatattttacttctggttagcaatccttactaggcctcagacgacctcaatataaatgtaggattgag
|| ||||| || ||| ||||||||||||| || ||||||||||| || ||||| || |||||||||||||||||||| |||||| ||||||||||    |||  || || || || | ||  |   | |  | ||  | | ||  | | |||    | | | || ||| || |  |    | |  || ||       
GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttccattgctgagactactatttttttcttacctctgttggattacttatgaacaaattgttcaaagcttcaaaccagtt--gcagacttgcagtg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675292|gb|CB671567.1|CB671567
EST:     CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTG                         GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
genomic: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
EST: gi|66915672|gb|CX102520.1|CX102520
EST:     CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAATTGTG                         GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
genomic: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
EST: gi|33683403|gb|CF311642.1|CF311642
EST:     CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTG                         GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
genomic: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
EST: gi|88974714|gb|CI023010.1|CI023010
EST:     CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTG                         GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
genomic: CCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
EST: gi|88956821|gb|CI009049.1|CI009049
EST:     ATTCTGTATATATGAGCAACTTCGAATTGGTTACGAAGTTGTG                         GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT
genomic: ATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacccatct ... gtctgttcagGCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCT