1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGAgtgagtgttcctagaatgttgtccaattctgaagtatgatcagcatgacctttatatgatattgattgtatgaaatttgtgaatctgcag
species | Oryza sativa |
transcript | LOC_Os05g26914.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGA GATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGTEST: gi|58656403|gb|CK045083.1|CK045083
genomic: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGAgtgagtgttc ... gaatctgcagGATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGT
EST: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGA GATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGTEST: gi|29620923|gb|CB625934.1|CB625934
genomic: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGAgtgagtgttc ... gaatctgcagGATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGT
EST: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGA GATTACTCAAACCCATTCGATCTCTTTGAATEST: gi|58689087|gb|CK077774.1|CK077774
genomic: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGAgtgagtgttc ... gaatctgcagGATTACTCAAACCCATTCGATCTCTTTGAAT
EST: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGA GATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGTEST: gi|58673732|gb|CK062418.1|CK062418
genomic: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGAgtgagtgttc ... gaatctgcagGATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGT
EST: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGA GATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGTEST: gi|58660788|gb|CK049468.1|CK049468
genomic: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGAgtgagtgttc ... gaatctgcagGATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGT
EST: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGA GATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGTEST: gi|58676612|gb|CK065299.1|CK065299
genomic: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGAgtgagtgttc ... gaatctgcagGATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGT
EST: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGA GATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGT
genomic: ATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGAgtgagtgttc ... gaatctgcagGATTACTCAAACCCATTCGATCTCTTTGAATCATTATTCGAAGGCTTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGTCTGATGATGAGAAGCGATCAATCTATGATAAATATGGAGAAGCTGGTTTGAAGGGTGCTGGAATGGGAACAGGAgtgagtgttcctagaatgttgtccaattctgaagtatgatcagcatgacctttatatgatattgattgtatgaaatttgtgaatctgcag
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA