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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGAGTGACACACAAAGATTTATGAATATATGTCTTGGgtaatttcttttgtcctatttggattatcttaaatttaaccatttgcaatcagtgagatgtcaactgaagaagtattcttccaaaaatttccactgagtt...

Basic information

species Oryza sativa
transcript LOC_Os05g25310.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g25310.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G079236_T02 (Zea mays), 5'ss of exon 8
AACCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGAGTGACACACAAAGATTTATGAATATATGTCTTGGgtaatttcttttgtcctatttggattatcttaaatttaaccatttgcaatcagtgagatgtcaactgaagaagtattctt--ccaaaaatttccactgagtt
||||||||||  | |||||||| || ||  | ||||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||| ||||||| |||| || |||  ||   | |  ||| | || |  || |  |  |  |   ||||    |  ||    ||||||    |   |     |    || 
AACCAATACGGGCAATGCTTGGAGGACGTGTAAGATTTGTTCTTTGTGGTGGTGCACCTTTATCAGGTGACACACAAAGATTCATGAATATATGTCTAGGgtaatgtcttctgccctgcttatctcaaattacaatttattatct-tagccgatcgaatgtatggtatagtgcgattcttagttatggaacagtatatcgt-

upper sequence: LOC_Os05g25310.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM5G840955_T01 (Zea mays), 5'ss of exon 1
AACCAATACGTTCCATGCTTGGTGGGCGCATTAGATTTGTTCTTTGTGGTGGTGCACCTCTATCGAGTGACACACAAAGATTTATGAATATATGTCTTGGgtaatttcttttgtcctatttggattatcttaaatttaaccatttgcaatcagtgagatgtcaactgaagaagtattctt--ccaaaaatttccactgagtt
||||||||||  | |||||||| || ||  | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |||| |  |||  ||   | |  ||| | || |  || |  |     |   ||||    |  |  |  ||||||    |   |     |     | 
AACCAATACGGGCAATGCTTGGAGGACGTCTAAGATTTGTTCTTTGTGGTGGTGCACCTCTGTCAAGTGACACACAAAGATTTATGAATATATGTCTAGGgtaatgtcttctcccctgcttatctcaaattacaatttattatct-tagctgatcgaatgtatggtataatatgattcttagttatggaacagtatatcat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163921593|gb|EG714144.1|EG714144
EST:     GGTGCACCTCTATCGAGTGACACACAAAGATTTATGAATATATGTCTTGG                         TGTACCAGTAGGTCGAGGCTATGGATTGACAGAGACTTGTGCTGGAGCAGC
genomic: GGTGCACCTCTATCGAGTGACACACAAAGATTTATGAATATATGTCTTGGgtaatttctt ... tgtgctgcagTGTACCAGTAGGTCAAGGCTATGGATTGACAGAGACTTGTGCTGGAGCAGC