1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTCACTGTGGCTCGTGTTGGGCATTTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaatatgaatgacaagtccgttctcatggccaaggcttctaacttaatttattgttcctttgctcacatagccaagctactgttttttattccttgtag
species | Oryza sativa |
transcript | LOC_Os05g24550.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|58688070|gb|CK076757.1|CK076757
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|27578059|gb|CB000754.1|CB000754
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|29680417|gb|CB676692.1|CB676692
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|29686789|gb|CB683064.1|CB683064
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|33798896|gb|CF325305.1|CF325305
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|58693640|gb|CK082327.1|CK082327
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|33806214|gb|CF328987.1|CF328987
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|29666315|gb|CB662590.1|CB662590
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|29639549|gb|CB644558.1|CB644558
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: CATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|29640250|gb|CB645259.1|CB645259
genomic: CATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|58609130|gb|CK037163.1|CK037163
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|66923450|gb|CX110298.1|CX110298
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGCEST: gi|29656220|gb|CB652495.1|CB652495
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
EST: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATG AACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
genomic: TTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaat ... ttccttgtagAACATTTCGCTATCTGTCAATGACCTAGTGGCATGCTGCGGTTTCATGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCACTGTGGCTCGTGTTGGGCATTTGGTGCTGTGGAGTGTCTCCAGGATCGTTTCTGCATTCATTTCAACATGgtcagtgaatatgaatgacaagtccgttctcatggccaaggcttctaacttaatttattgttcctttgctcacatagccaagctactgttttttattccttgtag
- - - - - - - - - - - - - - - - GTGGAG