1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatttttacttagcctttttattttttattcatcatcagtgttgtgtggtgttcaaatgcatattctacacaaatcaggatcctttcaaagaga...
species | Oryza sativa |
transcript | LOC_Os05g22970.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|33818513|gb|CF335087.1|CF335087
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGNGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88969340|gb|CI382888.1|CI382888
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTCCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|33819107|gb|CF335378.1|CF335378
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: GAGCGGTTCGAACGTCTTGGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|89192212|gb|CI393569.1|CI393569
genomic: GAGCGGTTCGAACGTCTTGGGG-TAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|87026661|gb|CI254767.1|CI254767
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|86484436|gb|CI127069.1|CI127069
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGGTGGCTACTGGATTGEST: gi|88489735|gb|CI427007.1|CI427007
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88282810|gb|CI402010.1|CI402010
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: GGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|87034760|gb|CI189384.1|CI189384
genomic: GGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|86846361|gb|CI280742.1|CI280742
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88201878|gb|CI202233.1|CI202233
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|25800681|gb|CA756642.1|CA756642
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCANAGACCCTGATGGCTACTGGATTGEST: gi|33819105|gb|CF335377.1|CF335377
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88473597|gb|CI410868.1|CI410868
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|86599770|gb|CI255932.1|CI255932
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88202210|gb|CI202565.1|CI202565
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGATCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88506478|gb|CI433984.1|CI433984
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACTTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|33813839|gb|CF332805.1|CF332805
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: GAGCGGTTCGAACGTCTTGGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|58687672|gb|CK076359.1|CK076359
genomic: GAGCGGTTCGAACGTCTTGGGG-TAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88264338|gb|CI368112.1|CI368112
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGATTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|33815680|gb|CF333691.1|CF333691
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: GAGCGGTTCGAACGTCTTGGGGTANAAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|86536276|gb|CI176482.1|CI176482
genomic: GAGCGGTTCGAACGTCTTGGGGTAGA-GTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|33813841|gb|CF332806.1|CF332806
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88849383|gb|CI089291.1|CI089291
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|86496472|gb|CI139105.1|CI139105
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|86593628|gb|CI264507.1|CI264507
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88257463|gb|CI359851.1|CI359851
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|88447060|gb|CI531303.1|CI531303
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTT-AAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGGTACTGGATTGEST: gi|58692806|gb|CK081493.1|CK081493
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|86511468|gb|CI154101.1|CI154101
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTGEST: gi|15846828|gb|BI795104.1|BI795104
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGA-CGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAA-GGCATTGCATTTATC-AAGACCCTGATGGCTACTGGATTGEST: gi|33815682|gb|CF333692.1|CF333692
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
EST: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATG GTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
genomic: TGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatt ... ttggctgcagGTAAAATGAAGGGCATTGCATTTATCAAAGACCCTGATGGCTACTGGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATATAGGAGTAACTGTTCACGATGTCTATAAGGCGTGTGAGCGGTTCGAACGTCTTGGGGTAGAGTTTGTTAAAAAGCCAGATGATGgtaaattatttttacttagcctttttattttttattcatcatcagtgttgtgtggtgttcaaatgcatattctacacaaatcaggatcctttcaaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG