1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAGGTGAAATCGTAAGGAGAGTGCTTCTTAAAATATCTTTGCAGTCTTCAATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttctcgctaaactcagttgtgtggtaatcttaatctataagctaggcaaataaagcatgatttgctgagaatatctataggatcacttggagtt...
species | Oryza sativa |
transcript | LOC_Os05g09500.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAG GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATEST: gi|33681408|gb|CF309647.1|CF309647
genomic: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
EST: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAG GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATEST: gi|29633966|gb|CB638975.1|CB638975
genomic: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
EST: GATCAGACCAAGCTCAAAACCCGCTTTATTCTGAG GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATEST: gi|29633165|gb|CB638174.1|CB638174
genomic: GATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
EST: GCTCAAAACCCGCTTTATTCTGAG GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATEST: gi|29672516|gb|CB668791.1|CB668791
genomic: GCTCAAAACCCGCTTTATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
EST: TTTTTGGCAATCTATATCAGACCAAGCTCAAAACCCGCTTTTATTCTGAG GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAAAATEST: gi|29672557|gb|CB668832.1|CB668832
genomic: TTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTT-ATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
EST: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAG GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATEST: gi|29669106|gb|CB665381.1|CB665381
genomic: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
EST: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAG GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATEST: gi|29672558|gb|CB668833.1|CB668833
genomic: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
EST: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAG GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATEST: gi|86493880|gb|CI136513.1|CI136513
genomic: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
EST: GATCAGACCAAGCTCAAAACCCGCTTTATTCTGAG GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATEST: gi|29674951|gb|CB671226.1|CB671226
genomic: GATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
EST: ATTTTTGGCAATCTAGATCAGCCCAAGCTCAAAACCCGCTTTATTCTGAG GCCTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
genomic: ATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttct ... ttatattcagGACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGGTGAAATCGTAAGGAGAGTGCTTCTTAAAATATCTTTGCAGTCTTCAATTTTTGGCAATCTAGATCAGACCAAGCTCAAAACCCGCTTTATTCTGAGgtatatttctcgctaaactcagttgtgtggtaatcttaatctataagctaggcaaataaagcatgatttgctgagaatatctataggatcacttggagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa