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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatattcttttcctgattaattgttttgccacaatggcgtatgttggattgtttggcaagtgaacataactctcttttggttgaaactcggtgtgcag

Basic information

species Oryza sativa
transcript LOC_Os05g07130.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 7
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatattcttttcctgattaattgttttgccacaatggcgtatgt---tggattgtttggcaagtgaacataactctcttttggttgaaactcggtgtgcag
|||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| |||||||| ||   | |||||| ||| ||||     |   || | |   |   || ||||  || | ||   |  | ||||||| |||||| |  ||||||||
GTTGGCCTACCAGCTCGTGGTAAAACCTTCACTGCAGTTAAGCTTACAAGGTACCTTCGTTGGTTGGGCCATGAAACTAGACATTTCAATGTTGGGAAGgtaattatattgttactccgattaactgtcttgcagagttaatgtgtttacttttcttatttgcaaaattaattgagttttcttttg-ttgaaaatatgtgtgcag

upper sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA02G39390.1 (Glycine max), 5'ss of exon 7
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatattcttttcctgattaattgttttgccacaatggcgtatgttggattgtttggcaagt-gaacataactctcttttggttgaaactcggtgtgcag-------------
||  |  | |||||||| || || ||||  || |||||||| |||||||| || ||||| |||||||||||| | |||| ||| ||||||||||| |||||  || |      ||| ||| | ||| || |     |||      | ||| ||    ||| |    | | |||  ||   ||||  |  |||      |                 
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttct----cattcttgactcattcttct-tagtaatcagtagtcttgtatctaatggaagacaggaaatatgtcaagtttgaatttaacaaaacttatgtttcaatgttgcag

upper sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 9
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgatt-atattcttttcctgattaat-tgttttgccacaatggcgtatgttggattgtttggcaagtgaacataactctcttttggt---tgaaactcggtgtgcag-----------------
|| || || ||||| || ||||||||||| || |||||||| |||||||| || ||||| |||||||||||| | |||| ||| ||||||||||| |||||  || | ||||||  | | ||| || |||||   || |||    ||  | |   |  |  | || || | |||  ||   | ||     ||||  |       |                   
GTGGGTCTGCCAGCCCGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgttcacattcttaacatcattcatctgtttaatcaaaata---tacttcgacctagtgcgaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

upper sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA14G37520.3 (Glycine max), 5'ss of exon 7
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgatt-atattctt------------ttcctgattaattgttttgccacaa-tggcgtatgttggattgtttggcaagt--gaacataactctcttttggttgaaactcggtgtgcag
||  |  | |||||||| || || ||||  || |||||||| || ||||| || ||||| |||||||||||| | |||| ||| ||||||||||| |||||  || | ||||||            ||  | || |||  | |||    |  |  || | |   |    | || |||||  |||  |||| | ||| || || ||  | |  |     
GTGAGTTTGCCAGCTCGAGGCAAGACTTACACTGCAGCTAAACTAACAAGATATCTTCGATGGTTAGGTCATAATACCAAACACTTCAATGTTGGTAAGgttgttcacattcttgactcattcttcttagtaatcaatcatcttgttgtatctaacgaaaggcaggaaatatgtcaagtttgaatttaacacacttatgtttcaatgttgcag-----

upper sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 13
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgt-gattatattctt-------ttc--ctgattaattgttttgccacaa--tggcgtatgttggattgtttggcaagt--gaac-ataactctcttttggttgaaactcgg-tgt-gcag
|| || || |||||  | ||||||||||| || |||||||| |||||||| || |||| ||||||||||||| | |||| ||| ||||||||||| ||||| | ||| ||||||       |||  ||| |||||   | | |  | |  | | | |     |    | || |||||  |||| || |   |        | |   | || |||  |||
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCATTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgtttaatcaatatacttcgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

upper sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA11G27870.1 (Glycine max), 5'ss of exon 8
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgt-gattatattcttttcctgattaattgttttgccacaatggcgtatgttggattgtttggcaagtgaacataactctcttttggt---tgaaactcggtgtgcag-----------------
|| || || |||||  | ||||||||||| || |||||||| |||||||| || |||||||||||||||||| | |||| ||| ||||||||||| ||||| | ||| ||||||  | | ||| ||   |||     |      ||  |||   |  |    || || | |||  ||   | ||     ||||  |       |                   
GTGGGTCTGCCAGCCAGAGGTAAAACTTTCACTGCAGCTAAACTTACAAGATATCTTCGTTGGTTAGGTCATAATACCAAACACTTCAATGTTGGGAAGgttgtttacattcttaacatcattcatctgttta----atcaatatactttgacctagtgcaaaactggaaatatgtcaagtatgaactatgaagattaacccacttatttttggatgtcacag

upper sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 7
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatattcttttcctgattaattgttttgccacaatggcgtatgttggattgtttggcaagtgaacataactctcttttggttgaaactcggtgtgcag
|||||| | |||||||| |||||||||||||| |||||||| |||||||| || ||||| ||||| |||||||| |||| ||| ||||||||||||||||||||| |||  ||||       || |  ||   ||||          ||| |  ||  || |  |  | || |||    |||||||| |||           
GTTGGCTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGCTGGTTGGGTCATGAGACCAAACACTTCAATGTTGGAAAGgtgatt-tatattttta------aagttattcatcacagctctaatcattgaa--gtgaggaagattgatatgact----tttggttgtaacag---------

upper sequence: LOC_Os05g07130.1 (Oryza sativa), 5'ss of exon 7
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 6
GTTGGCCTACCAGCTCGTGGTAAAACTTTTACCGCAGCTAAGCTTACAAGGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatattcttttcctgattaattgttttgccacaatggcgtatgttggattgtttggcaagtgaacataactctcttttggttgaaactcggtgtgcag-
||||||||||| ||||| || || |||||||| ||||||||||| || || || ||  | ||| | || ||||| |||| ||| ||||||||||||||||| |   || |||  || | | ||        |  | | | |  | |   |  ||   |     | |      | ||  | |    |       |||||  || 
GTTGGCCTACCTGCTCGAGGGAAGACTTTTACAGCAGCTAAGCTGACGAGATATCTCAGGTGGCTTGGCCATGATACCAAACACTTCAATGTTGGAAAGgtaagcttagtctgctcattagtagaca----gtgaaagtagtattttgagctttaactattgtgagggggacagtcattgtctacttggttctggtgtttagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33381245|gb|CF196588.1|CF196588
EST:     GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAG                         TACCGCCGCCTGAAGCATGGAGCAAATCAG
genomic: GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatat ... cggtgtgcagTACCGCCGCCTGAAGCATGGAGCAAATCAG
EST: gi|29616051|gb|CB621063.1|CB621063
EST:     GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAG                         TACCGCCGCCTGAAGCATGGAGCAAATCAG
genomic: GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatat ... cggtgtgcagTACCGCCGCCTGAAGCATGGAGCAAATCAG
EST: gi|58695801|gb|CK084488.1|CK084488
EST:     GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAG                         TACCGCCGCCTGAAGCATGGAGCAAATCAG
genomic: GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatat ... cggtgtgcagTACCGCCGCCTGAAGCATGGAGCAAATCAG
EST: gi|29615976|gb|CB620988.1|CB620988
EST:     GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAG                         TACCGCCGCCTGAAGCATGGAGCAAATCAGTCTGC
genomic: GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatat ... cggtgtgcagTACCGCCGCCTGAAGCATGGAGCAAATCAGTCTGC
EST: gi|29616011|gb|CB621023.1|CB621023
EST:     GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAG                         TACCGCCGCCTGAAGCATGGAGCAAATCAG
genomic: GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatat ... cggtgtgcagTACCGCCGCCTGAAGCATGGAGCAAATCAG
EST: gi|29615974|gb|CB620986.1|CB620986
EST:     GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAG                         TACCGCCGCCTGAAGCATGGAGCAAATCAG
genomic: GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatat ... cggtgtgcagTACCGCCGCCTGAAGCATGGAGCAAATCAG
EST: gi|58688458|gb|CK077145.1|CK077145
EST:     GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAG                         TACCGCCGCCTGAAGCATGGAGCAAATCAG
genomic: GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatat ... cggtgtgcagTACCGCCGCCTGAAGCATGGAGCAAATCAG
EST: gi|29612781|gb|CB617794.1|CB617794
EST:     GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAG                         TACCGCCGCCTGAAGCATGGAGCAAATCAG
genomic: GGTACCTTCGTTGGTTAGGTCATGAAACCAGACATTTCAATGTTGGAAAGgtgattatat ... cggtgtgcagTACCGCCGCCTGAAGCATGGAGCAAATCAG