1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGAAGACATTGATATTGCTAATTTTGATAGCCTTGTTCTACTAGCGTTCATAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTTgtaagtctctttgtttttgacaacctccactgatctttccttttcttttccatttactaccttcctttctgatgattcatttgaccatgcctttttggactaattactggtactcactttggcag
species | Oryza sativa |
transcript | LOC_Os05g05590.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTT GCTGGGTTGCTTAGTGCCTATATTATTAAGAAACTATEST: gi|29675121|gb|CB671396.1|CB671396
genomic: TAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTTgtaagtctct ... actttggcagGCTGGGTTGCTTAGTGCCTATATTATTAAGAAACTAT
EST: TAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTT GCTGGGTTGCTTAGTGCCTATATTATTAAGAAACTATGTTTTGCCAGEST: gi|29672522|gb|CB668797.1|CB668797
genomic: TAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTTgtaagtctct ... actttggcagGCTGGGTTGCTTAGTGCCTATATTATTAAGAAACTATGTTTTGCCAG
EST: TAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTT GCTGGGTTGCTTAGTGCCTATATTATTAAGAAACTATGTTTTGCCAGEST: gi|29685382|gb|CB681657.1|CB681657
genomic: TAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTTgtaagtctct ... actttggcagGCTGGGTTGCTTAGTGCCTATATTATTAAGAAACTATGTTTTGCCAG
EST: TAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTT GCTGGGTTGCTTAGTGCCTATATTATTAAGAAACTATGTTTTGCCAG
genomic: TAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTTgtaagtctct ... actttggcagGCTGGGTTGCTTAGTGCCTATATTATTAAGAAACTATGTTTTGCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGACATTGATATTGCTAATTTTGATAGCCTTGTTCTACTAGCGTTCATAGGAAATTTTCTCTACCTATTCTTCACCAGTACCCTTCTTGGAGTAGTTgtaagtctctttgtttttgacaacctccactgatctttccttttcttttccatttactaccttcctttctgatgattcatttgaccatgcctttttggactaattactggtactcactttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG