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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaactactccatcacctattgttatgcatgatcgtcagatatgttactataatattctggtcatgtaaacaaatatgagatagatgatatcatga...

Basic information

species Oryza sativa
transcript LOC_Os05g03480.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g03480.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G052630_T02 (Zea mays), 5'ss of exon 6
GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaactactccatcacctattgttatgcatgatcgt-------cagatatgttactataatattctggtcatgtaaacaaatatgagatagatgatatcatga
||||| ||||||||||||||| ||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||| | || |  ||   |||||| |        || ||  ||| ||| |   |||||||||||| | |  ||      |       |  |   
GTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGGgtacagaaccactccattatct-tcattggacatgattgagcatgaacacatgcgtttctacagctttctggtcatgtta-ctgatggtccttgttcacgactacag

upper sequence: LOC_Os05g03480.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G381051_T03 (Zea mays), 5'ss of exon 7
GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaactactccatcacctattgttatgcatgatcgt---------cagatatgttactataatattctggtcatgtaaacaaatatgagatagatgatatcatga
||||| || |||||||||||| ||||||| || |||||||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||| | | || |  ||   |||||| |             || | || ||| |   ||||   ||||| |   |   ||  ||   |   || |   
GTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGGgtacagaaccactccgttatct-tcattggacatgattgaacctgaacgtgtatgtatttctacagctttctcaccatgttactgagggtgc-atgtttacgattacag

upper sequence: LOC_Os05g03480.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA11G15900.1 (Glycine max), 5'ss of exon 8
GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaa-gaactactccatcacctattgttatgcatgatcgt-cagatatgttactataatattctggtcatgtaaacaaatatgagatag-atgatatcatga
||||| ||||| |||||||| ||| ||||||| |||||||| || || || ||||| ||||||||||| ||||| ||||||  |  |||  || | ||     ||||| ||  ||      || |     || || |  ||   | | || ||    || |  |||   |||   | || 
GTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGgtaattgctctaaaccttgacaacaagttatacaatattaagtggacaaacctctgtatt--tcaaatta-gttaattcttaggcaataatgtgaccacttgc

upper sequence: LOC_Os05g03480.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA12G07570.1 (Glycine max), 5'ss of exon 8
GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaa-gaactactccatcacctattgttatgcatgatcgt-cagatatgttactataatattctggtcatgtaaacaaatatgagatag-atgatatcatga
||||| ||||| |||||||| ||| ||||||| |||||||| || || || ||||| ||||||||||| ||||| ||||||  |  |||   | | ||     ||||| ||  ||      || |     |||||   ||        || ||    || |  |||   |||   | || 
GTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGgtaattgctctaaatcttgacaacaagttatacaatattaagtggacaaacctctata---tttcaacttagttaatttttaggcaataatgtgaccacttgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29661230|gb|CB657505.1|CB657505
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29680250|gb|CB676525.1|CB676525
EST:     ATCAAAAGGAATACCCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: ATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29641738|gb|CB646745.1|CB646745
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCA
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCA
EST: gi|29664861|gb|CB661136.1|CB661136
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|58595349|gb|CF993657.1|CF993657
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29672430|gb|CB668705.1|CB668705
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29642660|gb|CB647667.1|CB647667
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29669233|gb|CB665508.1|CB665508
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29668356|gb|CB664631.1|CB664631
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29674357|gb|CB670632.1|CB670632
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29662792|gb|CB659067.1|CB659067
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29644599|gb|CB649606.1|CB649606
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29670746|gb|CB667021.1|CB667021
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGTGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29658881|gb|CB655156.1|CB655156
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29673823|gb|CB670098.1|CB670098
EST:     CAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: CAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|58588211|gb|CF986519.1|CF986519
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29614820|gb|CB619833.1|CB619833
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29623029|gb|CB628040.1|CB628040
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGA
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGA
EST: gi|29664203|gb|CB660478.1|CB660478
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29682069|gb|CB678344.1|CB678344
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAG
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAG
EST: gi|29637231|gb|CB642240.1|CB642240
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29643545|gb|CB648552.1|CB648552
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29681462|gb|CB677737.1|CB677737
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29663217|gb|CB659492.1|CB659492
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29672429|gb|CB668704.1|CB668704
EST:     GCTGGATCAAAAGGAATAACCGCGATCATAATTGAGAAGGCGATGCCCGG                         GTTCAGTACTG
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTG
EST: gi|29661037|gb|CB657312.1|CB657312
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29659705|gb|CB655980.1|CB655980
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29664640|gb|CB660915.1|CB660915
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29657681|gb|CB653956.1|CB653956
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29669234|gb|CB665509.1|CB665509
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29674356|gb|CB670631.1|CB670631
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29670747|gb|CB667022.1|CB667022
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29663795|gb|CB660070.1|CB660070
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29672136|gb|CB668411.1|CB668411
EST:     CTGGATCAAAAGGAATAACCGCGTTCATAA-TGNAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: CTGGATCAAAAGGAATAACCGCGTTCATAATTG-AGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29661262|gb|CB657537.1|CB657537
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29637190|gb|CB642199.1|CB642199
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAATGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGACAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29675357|gb|CB671632.1|CB671632
EST:     GGGGATGCCCGGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACA
genomic: GGGGATGCCC-GGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACA
EST: gi|29683358|gb|CB679633.1|CB679633
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29664111|gb|CB660386.1|CB660386
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29637530|gb|CB642539.1|CB642539
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29661524|gb|CB657799.1|CB657799
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29663209|gb|CB659484.1|CB659484
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29671620|gb|CB667895.1|CB667895
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29661039|gb|CB657314.1|CB657314
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29675356|gb|CB671631.1|CB671631
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29678947|gb|CB675222.1|CB675222
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29642661|gb|CB647668.1|CB647668
EST:     GGGGATGCCCGGG                         GTTCAGTACTGCACAGAAGTTGGAC-AGCTTTGGCATGAGAGGAAGTGAC
genomic: GGGGATGCCC-GGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGC-TTGGCATGAGAGGAAGTGAC
EST: gi|29680932|gb|CB677207.1|CB677207
EST:     GAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29664257|gb|CB660532.1|CB660532
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|33683926|gb|CF312165.1|CF312165
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29642658|gb|CB647665.1|CB647665
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29661171|gb|CB657446.1|CB657446
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29665695|gb|CB661970.1|CB661970
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29661040|gb|CB657315.1|CB657315
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29679285|gb|CB675560.1|CB675560
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29661229|gb|CB657504.1|CB657504
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29664204|gb|CB660479.1|CB660479
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29663798|gb|CB660073.1|CB660073
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29657355|gb|CB653630.1|CB653630
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTNGGACA-GCTTGGCATGAGAGGAAGTGACA
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTT-GGACAAGCTTGGCATGAGAGGAAGTGACA
EST: gi|29637680|gb|CB642689.1|CB642689
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29671621|gb|CB667896.1|CB667896
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|218479296|gb|FG957919.1|FG957919
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29678948|gb|CB675223.1|CB675223
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29658317|gb|CB654592.1|CB654592
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29669119|gb|CB665394.1|CB665394
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29661172|gb|CB657447.1|CB657447
EST:     CTGGATCAAAAGGAATAACCGCGTTCATAA-TGNAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: CTGGATCAAAAGGAATAACCGCGTTCATAATTG-AGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29672647|gb|CB668922.1|CB668922
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATG
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATG
EST: gi|29680495|gb|CB676770.1|CB676770
EST:     ATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: ATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29666865|gb|CB663140.1|CB663140
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29664256|gb|CB660531.1|CB660531
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29668395|gb|CB664670.1|CB664670
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29680249|gb|CB676524.1|CB676524
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATG
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATG
EST: gi|29658318|gb|CB654593.1|CB654593
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29665694|gb|CB661969.1|CB661969
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29668355|gb|CB664630.1|CB664630
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|33683556|gb|CF311795.1|CF311795
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29680494|gb|CB676769.1|CB676769
EST:     GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: GCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
EST: gi|29661525|gb|CB657800.1|CB657800
EST:     ATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG                         GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC
genomic: ATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaact ... acttctgcagGTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGGgtaaagaactactccatcacctattgttatgcatgatcgtcagatatgttactataatattctggtcatgtaaacaaatatgagatagatgatatcatga

- - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - -  AAGGAA