Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTATCACACCTGAGAGTGTCATTTACAGCTTTGGTACCTTGCTTTTGGATGTTCTTAGTGGGAAGCATATTCCTCCTAGCCATgtatgcctttgagctttatttcatctagcaccattttacacttcctgcttttgcatcctgtcatgactgaatattttttttttctatatgcatccttgaa...

Basic information

species Oryza sativa
transcript LOC_Os04g58750.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 7
GACGTATCACACCTGAGAGTGTCATTTACAGCTTTGGTACCTTGCTTTTGGATGTTCTTAGTGGGAAGCATATTCCTCCTAGCCATgtatgc-----ctttgagctttatttcatctagcaccattttacacttcctgcttttgcatcctgtcatgactgaatattttttt--tttctatatgcatccttgaa
||||||| || ||||| |||||||| ||||||||||| ||||||||  | ||||||||||||||||||||||||||||| |||||||||||      | || |||| || | | |  || |     ||    ||  |  ||  || | || | |||  ||| |  | |       ||||   |||        
GACGTATTACTCCTGAAAGTGTCATATACAGCTTTGGAACCTTGCTGATTGATGTTCTTAGTGGGAAGCATATTCCTCCGAGCCATgtatgtaacaacattaagctctaatgcttagagaaatggctttgttttattttttaagcgttctcttatg-ttgactgatatggcagcatctactagcaat------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29624788|gb|CB629799.1|CB629799
EST:     GTACCTTGCTTTTGGATGTTCTTAGTGGGAAGCATATTCCTCCTAGCCAT                         GCCCTTGACCTGATTCGAGATCGGAATTTTAACATGCTGACAGACTCCTGT
genomic: GTACCTTGCTTTTGGATGTTCTTAGTGGGAAGCATATTCCTCCTAGCCATgtatgccttt ... aatatgacagGCCCTTGACCTGATTCGAGATCGGAATTTTAACATGCTGACAGACTCCTGT
EST: gi|58603429|gb|CK013957.1|CK013957
EST:     GTACCTTGCTTTTGGATGTTCTTAGTGGGAAGCATATTCCTCCTAGCCAT                         GCCCTTGACCTGATTCGAGATCGGAATTTTAACATGCTGACAGACTCCTGT
genomic: GTACCTTGCTTTTGGATGTTCTTAGTGGGAAGCATATTCCTCCTAGCCATgtatgccttt ... aatatgacagGCCCTTGACCTGATTCGAGATCGGAATTTTAACATGCTGACAGACTCCTGT
EST: gi|58656214|gb|CK044894.1|CK044894
EST:     GTACCTTGCTTTTGGATGTTCTTAGTGGGAAGCATATTCCTCCTAGCCAT                         GCCCTTGACCTGATTCGAGATCGGAATTTTAACATGCTGACAGACTCCTGT
genomic: GTACCTTGCTTTTGGATGTTCTTAGTGGGAAGCATATTCCTCCTAGCCATgtatgccttt ... aatatgacagGCCCTTGACCTGATTCGAGATCGGAATTTTAACATGCTGACAGACTCCTGT