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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCAAGGTGCCCTCAAACTTACTGGATTTCTGAAGGAACTAATGCAGCAGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatcttatttatgccaagacagctaatgttatttggatggatttgacctaatagctacagtccaactaattgtgcctgggggcctattagtcggggctaacctgaatttcacgtgacagttgacacacttttcctctatgtcattgtaaag

Basic information

species Oryza sativa
transcript LOC_Os04g57210.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g57210.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G043862_T01 (Zea mays), 5'ss of exon 8
GGGGCAAGGTGCCCTCAAACTTACTGGATTTCTGAAGGAACTAATGCAGCAGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatcttatttatgccaagacagctaatgttatttgga-tggatttgacctaatagctacagtccaactaattgtgcctgggggcctattagtcggggctaacctgaatttcacgtgacagttgacacacttttcctctatgtcattgtaaag
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GGGGCAAGGTGCCCTTAAACTCACTGGATTTCTCAAGGAGTTGATGCAGCGGAGAAATATATCCTGTGAGTCACTGTACACTGTTCGAACCATCAAGGAGgtaaaat-ttgtttacgctacaat-gttaaagttgtttgcagtagagatattctttta---agaatcttactaatag---ctacagacatgataattatatttagactgaagccaatctc-tggcttcttctgactctttctctctcat-gtgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66925992|gb|CX112840.1|CX112840
EST:     AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAG                         AAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
genomic: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatctt ... cattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
EST: gi|29663904|gb|CB660179.1|CB660179
EST:     AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAG                         AAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
genomic: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatctt ... cattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
EST: gi|29618213|gb|CB623225.1|CB623225
EST:     AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAG                         AAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
genomic: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatctt ... cattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
EST: gi|58589122|gb|CF987430.1|CF987430
EST:     AGAGAAATATAACATTTGAGTCACTGTACACTGGGCGAACCATCAAAGAG                         AAAC-TTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA
genomic: AGAGAAATATAACATTTGAGTCACTGTACACTGTTCGAACCATCAAAGAGgtaaaatctt ... cattgtaaagAAACTTTGTTACGTCGCGGCTGATTATGAAGCAGAAAAACGTAAAGATACA