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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGGAAACTATCCAGTAGGTAGGGATGATGCTGCACAGCTATCTGCTCTGCAAATATTGGTCGAAATTGGCTTTGTTGACAATCCTGAGTCTTGTGTgtaagtattttgtaaggccctgcctgatctcccattgcactcttgaatgtagtctcagcgattgtaacaataagatacatccttttgttttattgacatgaaattttcttgtcttcctag

Basic information

species Oryza sativa
transcript LOC_Os04g57140.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G070273_T01 (Zea mays), 5'ss of exon 7
TTTTAGGAAACTATCCAGTAGGTAGGGATGATGCTGCACAGCTATCTGCTCTGCAAATATTGGTCGAAATTGGCTTTGTTGACAATCCTGAGTCTTGTGTgtaagtattttgtaaggccctgcctgatctcccattgcactcttgaatgtagtctcagcgattgtaac---aataagatacatccttttgttttattgacatgaaattttcttgtcttcctag
|||| ||||||||||| || || |||||||||||| |||| || |||||||| || || ||||| || ||||| ||  |||| ||||||||||| |||||||||||||||  ||||| ||| |||||  ||||||  || | || | |||||| |    | | ||||    |||||  | |  ||| || |||| ||  ||  |                   
TTTTGGGAAACTATCCTGTCGGCAGGGATGATGCTTCACAACTCTCTGCTCTTCAGATCTTGGTTGAGATTGGATTCATTGATAATCCTGAGTCCTGTGTgtaagtatttcttaaggtcctacctgaattcccatgccatttttcagtgtagtatttctggtggtaaataaaataatgtcccccctgtttttttgttctcaccag------------------

upper sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G423861_T01 (Zea mays), 5'ss of exon 8
TTTTAGGAAACTATCCAGTAGGTAGGGATGATGCTGCACAGCTATCTGCTCTGCAAATATTGGTCGAAATTGGCTTTGTTGACAATCCTGAGTCTTGTGTgtaagtattttgtaaggccctgcctgatctcccattgcactcttgaatgtagtctcagcgattgtaacaataagatacatccttttgttttattgacatgaaattttcttgtcttcctag
|||| ||||||||||| || || |||||||||||| |||| || |||||||||||||| ||||| || ||||| ||  | |||||||||||||| || ||||||||||||  ||||| |   |||||| |  |||  || |      |  ||| | || | || |      || | | ||  |||       |          |||| |  |||    ||
TTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACAATCCTGAGTCCTGCGTgtaagtatttcttaaggtcacacctgatatttcatgccattgccattttcagtat-agtgtttatggtggcaacaaaaataatttgcccccctctgttcatttttttttgctctcatcag