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TTCTTCCAGCCTTTTCTGGTAACATCCCGGCCGCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTGgtgagaatggtttcctaactaaaagttcttgatttgaattttgttgtattgaaatgattgttaatcatataaagttatacttgcagttttggatttatgt...
species | Oryza sativa |
transcript | LOC_Os04g55730.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTG GTTCACAGTTGACAGCAACCCCAGGTGGTGTTGCACATATCTTCTGGATGCEST: gi|88331246|gb|CI639657.1|CI639657
genomic: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTGgtgagaatgg ... tgatattaagGTTCACAGTTGACAGCAACCCCAGGTGGTGTTGCACATATCTTCTGGATGC
EST: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTG GTTCACAGTTGACAGCAACCCCAGGTGGTGTTGCACATATCTTCTGGATGCEST: gi|88571480|gb|CI662853.1|CI662853
genomic: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTGgtgagaatgg ... tgatattaagGTTCACAGTTGACAGCAACCCCAGGTGGTGTTGCACATATCTTCTGGATGC
EST: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTG GTTCACAGTTGACAGCAACCCCAGGTGGTGTTGCACATATCTTCTGGATGCEST: gi|88332121|gb|CI643538.1|CI643538
genomic: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTGgtgagaatgg ... tgatattaagGTTCACAGTTGACAGCAACCCCAGGTGGTGTTGCACATATCTTCTGGATGC
EST: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTG GTTCACAGTTGACAGCAACCCCCAGGTGGTGTTGCACATATCTTCTGGATGEST: gi|88340838|gb|CI636998.1|CI636998
genomic: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTGgtgagaatgg ... tgatattaagGTTCACAGTTGACAGCAACCCC-AGGTGGTGTTGCACATATCTTCTGGATG
EST: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTG GTTCACAGTTGACAGCAACCCCAGGTGGTGTTGCACATATCTTCTGGAT
genomic: GCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTGgtgagaatgg ... tgatattaagGTTCACAGTTGACAGCAACCCCAGGTGGTGTTGCACATATCTTCTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTCCAGCCTTTTCTGGTAACATCCCGGCCGCACTAAGATCAAAATTTCCTTCAGCTAAAGTTACTCACCTTGGGAACTGgtgagaatggtttcctaactaaaagttcttgatttgaattttgttgtattgaaatgattgttaatcatataaagttatacttgcagttttggatttatgt
- - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT