1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTTCGCTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAgtgagtatctttatatcgatgaatttactttgaccggaagcatcaatctaattgacctgccattttacag
species | Oryza sativa |
transcript | LOC_Os04g55060.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAA GCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTEST: gi|88833166|gb|CI076649.1|CI076649
genomic: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAgtgagtatct ... cattttacagGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCT
EST: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAA GCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTEST: gi|86502353|gb|CI144986.1|CI144986
genomic: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAgtgagtatct ... cattttacagGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCT
EST: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAA GCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTEST: gi|33381467|gb|CF196810.1|CF196810
genomic: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAgtgagtatct ... cattttacagGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCT
EST: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAA GCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTEST: gi|29617447|gb|CB622459.1|CB622459
genomic: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAgtgagtatct ... cattttacagGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCT
EST: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAA GCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCTEST: gi|29629839|gb|CB634848.1|CB634848
genomic: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAgtgagtatct ... cattttacagGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCT
EST: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAA GCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCT
genomic: AAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAgtgagtatct ... cattttacagGCTAATCAGCGGATTATTGATGCTGCTGCCAGTAGGTTGGATATCCCATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCGCTTTGCTGTGCGATGTGTGCCACAATCTATTGAGAAGGCATTGGAAGAGGCTGGTTTACCTGCTTCCAGTATTGATTGGTTGTTGCTGCATCAAgtgagtatctttatatcgatgaatttactttgaccggaagcatcaatctaattgacctgccattttacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC